From Puffins to Plankton: A DNA-Based Analysis of a Seabird Food Chain in the Northern Gulf of Maine

Unveiling the Diet of Elusive Rainforest Herbivores in Next Generation Sequencing Era? The Tapir as a Case Study

(2013) Fabrice Hibert et al.   PLoS One

Parent–offspring dietary segregation of Cory’s shearwaters breeding in contrasting environments

(2012) Hany Alonso et al.   MARINE BIOLOGY

Carnivore diet analysis based on next-generation sequencing: application to the leopard cat (Prionailurus bengalensis) in Pakistan

(2012) WASIM SHEHZAD et al.   MOLECULAR ECOLOGY

Next-Generation Phylogeography: A Targeted Approach for Multilocus Sequencing of Non-Model Organisms

(2012) Jonathan B. Puritz et al.   PLoS One

Barcoded Primers Used in Multiplex Amplicon Pyrosequencing Bias Amplification

(2011) David Berry et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Quality control and preprocessing of metagenomic datasets

(2011) R. Schmieder et al.   BIOINFORMATICS

Optimal foraging in chick-raising Common Guillemots (Uria aalge)

(2011) Julie Bugge et al.   JOURNAL OF ORNITHOLOGY

Potential for between-mudflat movement and metapopulation dynamics in an intertidal burrowing amphipod

(2011) D Drolet et al.   MARINE ECOLOGY PROGRESS SERIES

Pyrosequencing of prey DNA in reptile faeces: analysis of earthworm consumption by slow worms

(2011) DAVID S. BROWN et al.   Molecular Ecology Resources

jMHC: software assistant for multilocus genotyping of gene families using next-generation amplicon sequencing

(2011) MICHAŁ T. STUGLIK et al.   Molecular Ecology Resources

Biodiversity and Ecosystem Function in the Gulf of Maine: Pattern and Role of Zooplankton and Pelagic Nekton

(2011) Catherine L. Johnson et al.   PLoS One

jMOTU and Taxonerator: Turning DNA Barcode Sequences into Annotated Operational Taxonomic Units

(2011) Martin Jones et al.   PLoS One

Molecular Diet Analysis of Two African Free-Tailed Bats (Molossidae) Using High Throughput Sequencing

(2011) Kristine Bohmann et al.   PLoS One

DNA-Based Faecal Dietary Analysis: A Comparison of qPCR and High Throughput Sequencing Approaches

(2011) Dáithí C. Murray et al.   PLoS One

Global Seabird Response to Forage Fish Depletion--One-Third for the Birds

(2011) P. M. Cury et al.   SCIENCE

High-throughput sequencing offers insight into mechanisms of resource partitioning in cryptic bat species

(2011) Orly Razgour et al.   Ecology and Evolution

Pyrosequencing faecal DNA to determine diet of little penguins: is what goes in what comes out?

(2010) Bruce E. Deagle et al.   CONSERVATION GENETICS

Non-lethal method to obtain stomach samples from a large marine predator and the use of DNA analysis to improve dietary information

(2010) Adam Barnett et al.   JOURNAL OF EXPERIMENTAL MARINE BIOLOGY AND ECOLOGY

Analysis of Australian fur seal diet by pyrosequencing prey DNA in faeces

(2009) BRUCE E. DEAGLE et al.   MOLECULAR ECOLOGY

Assessing morphological and DNA-based diet analysis techniques in a generalist predator, the arrow squidNototodarus gouldi

(2009) MICHELLE BRALEY et al.   Molecular Ecology Resources

A universal DNA mini-barcode for biodiversity analysis

(2008) Isabelle Meusnier et al.   BMC GENOMICS

Blocking primers to enhance PCR amplification of rare sequences in mixed samples – a case study on prey DNA in Antarctic krill stomachs

(2008) Hege Vestheim et al.   Frontiers in Zoology

Pyrobayes: an improved base caller for SNP discovery in pyrosequences

(2008) Aaron R Quinlan et al.   NATURE METHODS

Ecosystem oceanography for global change in fisheries

(2008) P CURY et al.   TRENDS IN ECOLOGY & EVOLUTION