INDIGO – INtegrated Data Warehouse of MIcrobial GenOmes with Examples from the Red Sea Extremophiles
出版年份 2013 全文链接
标题
INDIGO – INtegrated Data Warehouse of MIcrobial GenOmes with Examples from the Red Sea Extremophiles
作者
关键词
Genome annotation, Protein domains, Genome analysis, Genomic databases, Red Sea, BLAST algorithm, Comparative genomics, Extremophiles
出版物
PLoS One
Volume 8, Issue 12, Pages e82210
出版商
Public Library of Science (PLoS)
发表日期
2013-12-07
DOI
10.1371/journal.pone.0082210
参考文献
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注意：仅列出部分参考文献，下载原文获取全部文献信息。- Defensive Bacteriome Symbiont with a Drastically Reduced Genome
- (2013) Atsushi Nakabachi et al. CURRENT BIOLOGY
- CISA: Contig Integrator for Sequence Assembly of Bacterial Genomes
- (2013) Shin-Hung Lin et al. PLoS One
- InterMine: a flexible data warehouse system for the integration and analysis of heterogeneous biological data
- (2012) Richard N. Smith et al. BIOINFORMATICS
- The automatic annotation of bacterial genomes
- (2012) E. J. Richardson et al. BRIEFINGS IN BIOINFORMATICS
- Bacterial Degradation of Benzoate
- (2012) J. Andrés Valderrama et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- MicroScope—an integrated microbial resource for the curation and comparative analysis of genomic and metabolic data
- (2012) David Vallenet et al. NUCLEIC ACIDS RESEARCH
- CDD: conserved domains and protein three-dimensional structure
- (2012) Aron Marchler-Bauer et al. NUCLEIC ACIDS RESEARCH
- GenBank
- (2012) Dennis A. Benson et al. NUCLEIC ACIDS RESEARCH
- BG7: A New Approach for Bacterial Genome Annotation Designed for Next Generation Sequencing Data
- (2012) Pablo Pareja-Tobes et al. PLoS One
- Toward almost closed genomes with GapFiller
- (2012) Marten Boetzer et al. GENOME BIOLOGY
- Interactive metagenomic visualization in a Web browser
- (2011) Brian D Ondov et al. BMC BIOINFORMATICS
- Genome Sequence of Salinisphaera shabanensis, a Gammaproteobacterium from the Harsh, Variable Environment of the Brine-Seawater Interface of the Shaban Deep in the Red Sea
- (2011) A. Antunes et al. JOURNAL OF BACTERIOLOGY
- Genome Sequence of Haloplasma contractile, an Unusual Contractile Bacterium from a Deep-Sea Anoxic Brine Lake
- (2011) A. Antunes et al. JOURNAL OF BACTERIOLOGY
- Genome Sequence of Halorhabdus tiamatea, the First Archaeon Isolated from a Deep-Sea Anoxic Brine Lake
- (2011) A. Antunes et al. JOURNAL OF BACTERIOLOGY
- Biogeography of pelagic bacterioplankton across an antagonistic temperature-salinity gradient in the Red Sea
- (2011) DAVID KAMANDA NGUGI et al. MOLECULAR ECOLOGY
- Open-Source Genomic Analysis of Shiga-Toxin–ProducingE. coliO104:H4
- (2011) Holger Rohde et al. NEW ENGLAND JOURNAL OF MEDICINE
- The sequence read archive: explosive growth of sequencing data
- (2011) Y. Kodama et al. NUCLEIC ACIDS RESEARCH
- InterPro in 2011: new developments in the family and domain prediction database
- (2011) S. Hunter et al. NUCLEIC ACIDS RESEARCH
- Reorganizing the protein space at the Universal Protein Resource (UniProt)
- (2011) NUCLEIC ACIDS RESEARCH
- IMG: the integrated microbial genomes database and comparative analysis system
- (2011) V. M. Markowitz et al. NUCLEIC ACIDS RESEARCH
- NCBI Reference Sequences (RefSeq): current status, new features and genome annotation policy
- (2011) K. D. Pruitt et al. NUCLEIC ACIDS RESEARCH
- KEGG for integration and interpretation of large-scale molecular data sets
- (2011) M. Kanehisa et al. NUCLEIC ACIDS RESEARCH
- Microbiology of the Red Sea (and other) deep-sea anoxic brine lakes
- (2011) André Antunes et al. Environmental Microbiology Reports
- Scaffolding pre-assembled contigs using SSPACE
- (2010) Marten Boetzer et al. BIOINFORMATICS
- Prodigal: prokaryotic gene recognition and translation initiation site identification
- (2010) Doug Hyatt et al. BMC BIOINFORMATICS
- A Catalog of Reference Genomes from the Human Microbiome
- (2010) et al. SCIENCE
- Pathway Tools version 13.0: integrated software for pathway/genome informatics and systems biology
- (2009) P. D. Karp et al. BRIEFINGS IN BIOINFORMATICS
- JBrowse: A next-generation genome browser
- (2009) M. E. Skinner et al. GENOME RESEARCH
- Anaerobic Catabolism of Aromatic Compounds: a Genetic and Genomic View
- (2009) M. Carmona et al. MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS
- MicrobesOnline: an integrated portal for comparative and functional genomics
- (2009) P. S. Dehal et al. NUCLEIC ACIDS RESEARCH
- MetaGeneAnnotator: Detecting Species-Specific Patterns of Ribosomal Binding Site for Precise Gene Prediction in Anonymous Prokaryotic and Phage Genomes
- (2008) H. Noguchi et al. DNA RESEARCH
- Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
- (2008) D. R. Zerbino et al. GENOME RESEARCH
- Halorhabdus tiamatea sp. nov., a non-pigmented, extremely halophilic archaeon from a deep-sea, hypersaline anoxic basin of the Red Sea, and emended description of the genus Halorhabdus
- (2008) A. Antunes et al. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
- A New Lineage of Halophilic, Wall-Less, Contractile Bacteria from a Brine-Filled Deep of the Red Sea
- (2008) A. Antunes et al. JOURNAL OF BACTERIOLOGY
- RNA-Seq: a revolutionary tool for transcriptomics
- (2008) Zhong Wang et al. NATURE REVIEWS GENETICS
- InterPro: the integrative protein signature database
- (2008) S. Hunter et al. NUCLEIC ACIDS RESEARCH
- Bioinformatics challenges of new sequencing technology
- (2008) Mihai Pop et al. TRENDS IN GENETICS
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