Genome-Wide Identification, Phylogeny, Evolution and Expression Patterns of AP2/ERF Genes and Cytokinin Response Factors in Brassica rapa ssp. pekinensis

Genome-wide analysis of the AP2/ERF transcription factor superfamily in Chinese cabbage (Brassica rapa ssp. pekinensis)

(2013) Xiaoming Song et al.   BMC GENOMICS

Identification, expression, and comparative genomic analysis of the IPT and CKX gene families in Chinese cabbage (Brassica rapa ssp. pekinensis)

(2013) Zhenning Liu et al.   BMC GENOMICS

Genome-wide Analysis of the Distribution of AP2/ERF Transcription Factors Reveals Duplication and Elucidates their Potential Function in Chinese Cabbage (Brassica rapa ssp. pekinensis)

(2013) Meng-Yao Li et al.   PLANT MOLECULAR BIOLOGY REPORTER

AP2/ERF Transcription Factor in Rice: Genome-Wide Canvas and Syntenic Relationships between Monocots and Eudicots

(2012) Muhammad Rashid et al.   Evolutionary Bioinformatics

Auxin response factor gene family in Brassica rapa: genomic organization, divergence, expression, and evolution

(2012) Jeong-Hwan Mun et al.   MOLECULAR GENETICS AND GENOMICS

Genome-wide analysis of Aux/IAA gene family in Solanaceae species using tomato as a model

(2012) Jian Wu et al.   MOLECULAR GENETICS AND GENOMICS

PGDD: a database of gene and genome duplication in plants

(2012) Tae-Ho Lee et al.   NUCLEIC ACIDS RESEARCH

Vascular Expression and C-Terminal Sequence Divergence of Cytokinin Response Factors in Flowering Plants

(2012) Paul J. Zwack et al.   PLANT AND CELL PHYSIOLOGY

Genome-Wide Analysis of the AP2/ERF Gene Family in Prunus mume

(2012) Dongliang Du et al.   PLANT MOLECULAR BIOLOGY REPORTER

Overexpression of a Chinese cabbage BrERF11 transcription factor enhances disease resistance to Ralstonia solanacearum in tobacco

(2012) Yan Lai et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Gene Regulation by Cytokinin in Arabidopsis

(2012) Wolfram G. Brenner et al.   Frontiers in Plant Science

Syntenic gene analysis between Brassica rapa and other Brassicaceae species

(2012) Feng Cheng et al.   Frontiers in Plant Science

AP2/ERF family transcription factors in plant abiotic stress responses

(2011) Junya Mizoi et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

BRAD, the genetics and genomics database for Brassica plants

(2011) Feng Cheng et al.   BMC PLANT BIOLOGY

Genome-wide identification and phylogenetic analysis of the ERF gene family in cucumbers

(2011) Lifang Hu et al.   GENETICS AND MOLECULAR BIOLOGY

Genome-wide identification, classification, and analysis of two-component signal system genes in maize

(2011) Z.X. Chu et al.   GENETICS AND MOLECULAR RESEARCH

Solanum lycopersicum cytokinin response factor (SlCRF) genes: characterization of CRF domain-containing ERF genes in tomato

(2011) Xiuling Shi et al.   JOURNAL OF EXPERIMENTAL BOTANY

CRFs form protein–protein interactions with each other and with members of the cytokinin signalling pathway in Arabidopsis via the CRF domain

(2011) James W. Cutcliffe et al.   JOURNAL OF EXPERIMENTAL BOTANY

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

(2011) K. Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Oxygen sensing in plants is mediated by an N-end rule pathway for protein destabilization

(2011) Francesco Licausi et al.   NATURE

The genome of the mesopolyploid crop species Brassica rapa

(2011) Xiaowu Wang et al.   NATURE GENETICS

Phytozome: a comparative platform for green plant genomics

(2011) David M. Goodstein et al.   NUCLEIC ACIDS RESEARCH

SMART 7: recent updates to the protein domain annotation resource

(2011) I. Letunic et al.   NUCLEIC ACIDS RESEARCH

The Pfam protein families database

(2011) M. Punta et al.   NUCLEIC ACIDS RESEARCH

Combined transcriptome, genetic diversity and metabolite profiling in tomato fruit reveals that the ethylene response factor SlERF6 plays an important role in ripening and carotenoid accumulation

(2011) Je Min Lee et al.   PLANT JOURNAL

Protein import into chloroplasts: The Tic complex and its regulation

(2010) Erika Kovács-Bogdán et al.   BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR CELL RESEARCH

Assigning roles to DNA regulatory motifs using comparative genomics

(2010) Fabian A. Buske et al.   BIOINFORMATICS

The CRF domain defines Cytokinin Response Factor proteins in plants

(2010) Aaron M Rashotte et al.   BMC PLANT BIOLOGY

Genome-wide analysis of NAC transcription factor family in rice

(2010) Mohammed Nuruzzaman et al.   GENE

Overexpression of an AP2/ERF-type Transcription Factor CRF5 Confers Pathogen Resistance to Arabidopsis Plants

(2010) Ying Shi Liang   Journal of the Korean Society for Applied Biological Chemistry

Identification, phylogeny, and transcript profiling of ERF family genes during development and abiotic stress treatments in tomato

(2010) Manoj K. Sharma et al.   MOLECULAR GENETICS AND GENOMICS

CDD: a Conserved Domain Database for the functional annotation of proteins

(2010) A. Marchler-Bauer et al.   NUCLEIC ACIDS RESEARCH

Gene Structures, Classification and Expression Models of the AP2/EREBP Transcription Factor Family in Rice

(2010) Akhter Most Sharoni et al.   PLANT AND CELL PHYSIOLOGY

Discovery, phylogeny and expression patterns of AP2-like genes in maize

(2010) Jing Zhuang et al.   PLANT GROWTH REGULATION

Dated molecular phylogenies indicate a Miocene origin for Arabidopsis thaliana

(2010) M. A. Beilstein et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

AP2/EREBP transcription factors are part of gene regulatory networks and integrate metabolic, hormonal and environmental signals in stress acclimation and retrograde signalling

(2010) Karl-Josef Dietz et al.   PROTOPLASMA

Cytokinin action in plant development

(2009) Tomáš Werner et al.   CURRENT OPINION IN PLANT BIOLOGY

Analysis of Brassica rapa ESTs: gene discovery and expression patterns of AP2/ERF family genes

(2009) Jing Zhuang et al.   MOLECULAR BIOLOGY REPORTS

The PLASTID DIVISION1 and 2 Components of the Chloroplast Division Machinery Determine the Rate of Chloroplast Division in Land Plant Cell Differentiation

(2009) K. Okazaki et al.   PLANT CELL

Genome-wide analysis of the putative AP2/ERF family genes in Vitis vinifera

(2009) Jing Zhuang et al.   SCIENTIA HORTICULTURAE

Phylogenetic and Functional Assessment of Orthologs Inference Projects and Methods

(2009) Adrian M. Altenhoff et al.   PLoS Computational Biology

Genome-wide comparative analysis of the Brassica rapa gene space reveals genome shrinkage and differential loss of duplicated genes after whole genome triplication

(2009) Jeong-Hwan Mun et al.   GENOME BIOLOGY

Genome-wide analysis of the AP2/ERF gene family in Populus trichocarpa

(2008) Jing Zhuang et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Functions of the ERF transcription factor family in plants

(2008) Zhao-Shi Xu et al.   Botany

A novel activator-type ERF of Thinopyrum intermedium, TiERF1, positively regulates defence responses

(2008) HongXia Liang et al.   JOURNAL OF EXPERIMENTAL BOTANY

Phylogeny, gene structures, and expression patterns of the ERF gene family in soybean (Glycine max L.)

(2008) Gaiyun Zhang et al.   JOURNAL OF EXPERIMENTAL BOTANY

Systematic sequence analysis and identification of tissue-specific or stress-responsive genes of NAC transcription factor family in rice

(2008) Yujie Fang et al.   MOLECULAR GENETICS AND GENOMICS

Synteny and Collinearity in Plant Genomes

(2008) H. Tang et al.   SCIENCE