Quantifying Intrinsic and Extrinsic Variability in Stochastic Gene Expression Models

Noise-mean relationship in mutated promoters

(2012) G. Hornung et al.   GENOME RESEARCH

Dynamics of protein noise can distinguish between alternate sources of gene-expression variability

(2012) Abhyudai Singh et al.   Molecular Systems Biology

Using Temporal Correlations and Full Distributions to Separate Intrinsic and Extrinsic Fluctuations in Biological Systems

(2012) Andreas Hilfinger et al.   PHYSICAL REVIEW LETTERS

Transcriptional burst frequency and burst size are equally modulated across the human genome

(2012) R. D. Dar et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Using Gene Expression Noise to Understand Gene Regulation

(2012) B. Munsky et al.   SCIENCE

Mitochondrial Variability as a Source of Extrinsic Cellular Noise

(2012) Iain G. Johnston et al.   PLoS Computational Biology

Negative Feedback Through mRNA Provides the Best Control of Gene-Expression Noise

(2011) Abhyudai Singh   IEEE TRANSACTIONS ON NANOBIOSCIENCE

Exact and approximate distributions of protein and mRNA levels in the low-copy regime of gene expression

(2011) Pavol Bokes et al.   JOURNAL OF MATHEMATICAL BIOLOGY

Synthetic incoherent feedforward circuits show adaptation to the amount of their genetic template

(2011) L. Bleris et al.   Molecular Systems Biology

Separating intrinsic from extrinsic fluctuations in dynamic biological systems

(2011) A. Hilfinger et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Transcriptional Bursting from the HIV-1 Promoter Is a Significant Source of Stochastic Noise in HIV-1 Gene Expression

(2010) Abhyudai Singh et al.   BIOPHYSICAL JOURNAL

Approximate Moment Dynamics for Chemically Reacting Systems

(2010) Abhyudai Singh et al.   IEEE TRANSACTIONS ON AUTOMATIC CONTROL

Functional roles for noise in genetic circuits

(2010) Avigdor Eldar et al.   NATURE

Stochastic hybrid systems for studying biochemical processes

(2010) A. Singh et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY A-MATHEMATICAL PHYSICAL AND ENGINEERING SCIENCES

Quantifying E. coli Proteome and Transcriptome with Single-Molecule Sensitivity in Single Cells

(2010) Y. Taniguchi et al.   SCIENCE

Optimal Feedback Strength for Noise Suppression in Autoregulatory Gene Networks

(2009) Abhyudai Singh et al.   BIOPHYSICAL JOURNAL

Listening to the noise: random fluctuations reveal gene network parameters

(2009) Brian Munsky et al.   Molecular Systems Biology

Negative autoregulation linearizes the dose-response and suppresses the heterogeneity of gene expression

(2009) D. Nevozhay et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Bistability, Epigenetics, and Bet-Hedging in Bacteria

(2008) Jan-Willem Veening et al.   Annual Review of Microbiology

Nature, Nurture, or Chance: Stochastic Gene Expression and Its Consequences

(2008) Arjun Raj et al.   CELL

Colored extrinsic fluctuations and stochastic gene expression

(2008) Vahid Shahrezaei et al.   Molecular Systems Biology

Selection to minimise noise in living systems and its implications for the evolution of gene expression

(2008) Ben Lehner   Molecular Systems Biology

Transient-mediated fate determination in a transcriptional circuit of HIV

(2008) Leor S Weinberger et al.   NATURE GENETICS

Analytical distributions for stochastic gene expression

(2008) V. Shahrezaei et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Effects of Molecular Memory and Bursting on Fluctuations in Gene Expression

(2008) J. M. Pedraza et al.   SCIENCE

Stochasticity and Cell Fate

(2008) R. Losick et al.   SCIENCE