Identification of miRNAs and Their Target Genes in Peach (Prunus persica L.) Using High-Throughput Sequencing and Degradome Analysis

High-throughput sequencing of small RNAs and analysis of differentially expressed microRNAs associated with pistil development in Japanese apricot

(2012) Zhihong Gao et al.   BMC GENOMICS

Genome wide identification of chilling responsive microRNAs in Prunus persica

(2012) Abdelali Barakat et al.   BMC GENOMICS

Identification of novel microRNAs in Hevea brasiliensis and computational prediction of their targets

(2012) Virginie Gébelin et al.   BMC PLANT BIOLOGY

Unique expression, processing regulation, and regulatory network of peach (Prunus persica) miRNAs

(2012) Hong Zhu et al.   BMC PLANT BIOLOGY

Biogenesis, functions and fate of plant microRNAs

(2012) Afsar Raza Naqvi et al.   JOURNAL OF CELLULAR PHYSIOLOGY

Identification and validation of potential conserved microRNAs and their targets in peach (Prunus persica)

(2012) Zhihong Gao et al.   MOLECULES AND CELLS

Genome-Wide Identification of miRNAs Responsive to Drought in Peach (Prunus persica) by High-Throughput Deep Sequencing

(2012) Vahap Eldem et al.   PLoS One

Identification and characterization of maize microRNAs involved in the very early stage of seed germination

(2011) Liwen Wang et al.   BMC GENOMICS

Identification of novel soybean microRNAs involved in abiotic and biotic stresses

(2011) Franceli R Kulcheski et al.   BMC GENOMICS

Identification of miRNAs and their target genes in developing soybean seeds by deep sequencing

(2011) Qing-Xin Song et al.   BMC PLANT BIOLOGY

Genome-wide characterization of new and drought stress responsive microRNAs in Populus euphratica

(2011) Bosheng Li et al.   JOURNAL OF EXPERIMENTAL BOTANY

Computational identification of microRNAs in peach expressed sequence tags and validation of their precise sequences by miR-RACE

(2011) Yanping Zhang et al.   MOLECULAR BIOLOGY REPORTS

Massive Analysis of Rice Small RNAs: Mechanistic Implications of Regulated MicroRNAs and Variants for Differential Target RNA Cleavage

(2011) D.-H. Jeong et al.   PLANT CELL

Sequencing-Based Approaches Reveal Low Ambient Temperature-Responsive and Tissue-Specific MicroRNAs in Phalaenopsis Orchid

(2011) Feng-Ming An et al.   PLoS One

Prediction of novel miRNAs and associated target genes in Glycine max

(2010) Trupti Joshi et al.   BMC BIOINFORMATICS

Deep sequencing discovery of novel and conserved microRNAs in trifoliate orange (Citrus trifoliata)

(2010) Changnian Song et al.   BMC GENOMICS

Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type

(2010) Qiang Xu et al.   BMC GENOMICS

DNA Methylation Mediated by a MicroRNA Pathway

(2010) Liang Wu et al.   MOLECULAR CELL

Unique functionality of 22-nt miRNAs in triggering RDR6-dependent siRNA biogenesis from target transcripts in Arabidopsis

(2010) Josh T Cuperus et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Arabidopsis lyrataSmall RNAs: TransientMIRNAand Small Interfering RNA Loci within theArabidopsisGenus

(2010) Zhaorong Ma et al.   PLANT CELL

22-nucleotide RNAs trigger secondary siRNA biogenesis in plants

(2010) H.-M. Chen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Direct Isolation of High-Quality Low Molecular Weight RNA of Pear Peel from the Extraction Mixture Containing Nucleic Acid

(2009) Xin-wei Wang et al.   MOLECULAR BIOTECHNOLOGY

Construction of Parallel Analysis of RNA Ends (PARE) libraries for the study of cleaved miRNA targets and the RNA degradome

(2009) Marcelo A German et al.   Nature Protocols

Genome-wide analysis reveals rapid and dynamic changes in miRNA and siRNA sequence and expression during ovule and fiber development in allotetraploid cotton (Gossypium hirsutum L.)

(2009) Mingxiong Pang et al.   GENOME BIOLOGY

CleaveLand: a pipeline for using degradome data to find cleaved small RNA targets

(2008) C. Addo-Quaye et al.   BIOINFORMATICS

High-throughput sequencing of Medicago truncatula short RNAs identifies eight new miRNA families

(2008) Gyorgy Szittya et al.   BMC GENOMICS

Novel and nodulation-regulated microRNAs in soybean roots

(2008) Senthil Subramanian et al.   BMC GENOMICS

Endogenous siRNA and miRNA Targets Identified by Sequencing of the Arabidopsis Degradome

(2008) Charles Addo-Quaye et al.   CURRENT BIOLOGY

Global identification of microRNA–target RNA pairs by parallel analysis of RNA ends

(2008) Marcelo A German et al.   NATURE BIOTECHNOLOGY

Criteria for Annotation of Plant MicroRNAs

(2008) B. C. Meyers et al.   PLANT CELL

Stress-responsive microRNAs inPopulus

(2008) Shanfa Lu et al.   PLANT JOURNAL

Multiple Models for Rosaceae Genomics

(2008) V. Shulaev et al.   PLANT PHYSIOLOGY

Reconstituting plant miRNA biogenesis

(2008) J.-K. Zhu   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA