De Novo Transcriptome Assembly for the Tropical Grass Panicum maximum Jacq

Characterization of the global transcriptome for Pyropia haitanensis (Bangiales, Rhodophyta) and development of cSSR markers

(2013) Chaotian Xie et al.   BMC GENOMICS

De Novo Transcriptome Assembly in Chili Pepper (Capsicum frutescens) to Identify Genes Involved in the Biosynthesis of Capsaicinoids

(2013) Shaoqun Liu et al.   PLoS One

Exploring the Switchgrass Transcriptome Using Second-Generation Sequencing Technology

(2012) Yixing Wang et al.   PLoS One

NGS QC Toolkit: A Toolkit for Quality Control of Next Generation Sequencing Data

(2012) Ravi K. Patel et al.   PLoS One

The First Illumina-Based De Novo Transcriptome Sequencing and Analysis of Safflower Flowers

(2012) Huang Lulin et al.   PLoS One

A Genome-Wide Survey of Switchgrass Genome Structure and Organization

(2012) Manoj K. Sharma et al.   PLoS One

Transcriptome Sequencing and De Novo Analysis for Ma Bamboo (Dendrocalamus latiflorus Munro) Using the Illumina Platform

(2012) Mingying Liu et al.   PLoS One

Breeding tropical forages

(2012) L Jank et al.   Crop Breeding and Applied Biotechnology

Correlations among anatomical, morphological, chemical and agronomic characteristics of leaf blades in Panicum maximum genotypes

(2011) C. Batistoti et al.   ANIMAL FEED SCIENCE AND TECHNOLOGY

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

In silico comparative analysis of SSR markers in plants

(2011) Filipe C Victoria et al.   BMC PLANT BIOLOGY

Cellulose Synthases and Synthesis in Arabidopsis

(2011) Anne Endler et al.   Molecular Plant

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

Molecular Diversity and Genetic Structure of Guineagrass (Panicum maximum Jacq.), a Tropical Pasture Grass

(2011) Adna Cristina Barbosa de Sousa et al.   Tropical Plant Biology

Transcriptome sequencing in an ecologically important tree species: assembly, annotation, and marker discovery

(2010) Thomas L Parchman et al.   BMC GENOMICS

Complete Switchgrass Genetic Maps Reveal Subgenome Collinearity, Preferential Pairing and Multilocus Interactions

(2010) M. Okada et al.   GENETICS

Development of microsatellite markers in Guineagrass (Panicum maximum Jacq.) and their transferability to other tropical forage grass species

(2010) A. C. B. Sousa et al.   PLANT BREEDING

Lignin Biosynthesis and Structure

(2010) R. Vanholme et al.   PLANT PHYSIOLOGY

Large-scale production, harvest and logistics of switchgrass (Panicum virgatum L.) - current technology and envisioning a mature technology

(2009) Shahab Sokhansanj et al.   Biofuels Bioproducts & Biorefining-Biofpr

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

Isolation and characterization of microsatellite markers from guineagrass (Panicum maximum) for genetic diversity estimate and cross-species amplification

(2009) A. Chandra et al.   PLANT BREEDING

Normal growth of Arabidopsis requires cytosolic invertase but not sucrose synthase

(2009) D. H. P. Barratt et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Cellulosic Biofuels

(2008) Andrew Carroll et al.   Annual Review of Plant Biology

Analysis of expressed sequence tags in apomictic guineagrass (Panicum maximum)

(2008) Hitomi Yamada-Akiyama et al.   JOURNAL OF PLANT PHYSIOLOGY

RNA-Seq: a revolutionary tool for transcriptomics

(2008) Zhong Wang et al.   NATURE REVIEWS GENETICS