Inter- and Intra-Host Viral Diversity in a Large Seasonal DENV2 Outbreak

Experimental Analysis of Sources of Error in Evolutionary Studies Based on Roche/454 Pyrosequencing of Viral Genomes

(2012) E. A. Becker et al.   Genome Biology and Evolution

Analysis of Hepatitis C Virus Intrahost Diversity across the Coding Region by Ultradeep Pyrosequencing

(2012) M. Lauck et al.   JOURNAL OF VIROLOGY

SIV Genome-Wide Pyrosequencing Provides a Comprehensive and Unbiased View of Variation within and outside CD8 T Lymphocyte Epitopes

(2012) Austin L. Hughes et al.   PLoS One

Whole Genome Deep Sequencing of HIV-1 Reveals the Impact of Early Minor Variants Upon Immune Recognition During Acute Infection

(2012) Matthew R. Henn et al.   PLoS Pathogens

Accuracy and quality assessment of 454 GS-FLX Titanium pyrosequencing

(2011) André Gilles et al.   BMC GENOMICS

Use of Illumina Deep Sequencing Technology To Differentiate Hepatitis C Virus Variants

(2011) M. Ninomiya et al.   JOURNAL OF CLINICAL MICROBIOLOGY

High-Resolution Analysis of Intrahost Genetic Diversity in Dengue Virus Serotype 1 Infection Identifies Mixed Infections

(2011) K. T. D. Thai et al.   JOURNAL OF VIROLOGY

Highly Pathogenic Avian Influenza Virus Subtype H5N1 Escaping Neutralization: More than HA Variation

(2011) D. Hoper et al.   JOURNAL OF VIROLOGY

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

(2011) K. Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Defective Interfering Viral Particles in Acute Dengue Infections

(2011) Dongsheng Li et al.   PLoS One

Comparison of Sequence Reads Obtained from Three Next-Generation Sequencing Platforms

(2011) Shingo Suzuki et al.   PLoS One

Intra- and Interhost Evolutionary Dynamics of Equine Influenza Virus

(2010) P. R. Murcia et al.   JOURNAL OF VIROLOGY

Whole-Genome Characterization of Human and Simian Immunodeficiency Virus Intrahost Diversity by Ultradeep Pyrosequencing

(2010) B. N. Bimber et al.   JOURNAL OF VIROLOGY

Characterization of Dengue Virus Type 2: New Insights on the 2010 Brazilian Epidemic

(2010) Camila Malta Romano et al.   PLoS One

C6/36 Aedes albopictus Cells Have a Dysfunctional Antiviral RNA Interference Response

(2010) Doug E. Brackney et al.   PLoS Neglected Tropical Diseases

Evolution, dispersal and replacement of American genotype dengue type 2 viruses in India (1956-2005): selection pressure and molecular clock analyses

(2009) S. R. P. Kumar et al.   JOURNAL OF GENERAL VIROLOGY

Massively parallel pyrosequencing highlights minority variants in the HIV-1 env quasispecies deriving from lymphomonocyte sub-populations

(2009) Gabriella Rozera et al.   Retrovirology

Dengue 1 Diversity and Microevolution, French Polynesia 2001–2006: Connection with Epidemiology and Clinics

(2009) Elodie Descloux et al.   PLoS Neglected Tropical Diseases

Mosquitoes Put the Brake on Arbovirus Evolution: Experimental Evolution Reveals Slower Mutation Accumulation in Mosquito Than Vertebrate Cells

(2009) Nikos Vasilakis et al.   PLoS Pathogens

Dengue and Dengue Hemorrhagic Fever among Adults: Clinical Outcomes Related to Viremia, Serotypes, and Antibody Response

(2008) Adriana O. Guilarde et al.   JOURNAL OF INFECTIOUS DISEASES

jModelTest: Phylogenetic Model Averaging

(2008) D. Posada   MOLECULAR BIOLOGY AND EVOLUTION

Rates of evolutionary change in viruses: patterns and determinants

(2008) Siobain Duffy et al.   NATURE REVIEWS GENETICS

Arbovirus evolution in vivo is constrained by host alternation

(2008) L. L. Coffey et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA