LegumeGRN: A Gene Regulatory Network Prediction Server for Functional and Comparative Studies

Establishment of theLotus japonicusGene Expression Atlas (LjGEA) and its use to explore legume seed maturation

(2013) Jerome Verdier et al.   PLANT JOURNAL

Inferring gene regulatory networks by ANOVA

(2012) Robert Küffner et al.   BIOINFORMATICS

An estimation method for inference of gene regulatory net-work using Bayesian network with uniting of partial problems

(2012) Yukito Watanabe et al.   BMC GENOMICS

TIGRESS: Trustful Inference of Gene REgulation using Stability Selection

(2012) Anne-Claire Haury et al.   BMC Systems Biology

Wisdom of crowds for robust gene network inference

(2012) Daniel Marbach et al.   NATURE METHODS

Toward the identification and regulation of the Arabidopsis thaliana ABI3 regulon

(2012) Gudrun Mönke et al.   NUCLEIC ACIDS RESEARCH

Multiple models to capture the variability in biological neurons and networks

(2011) Eve Marder et al.   NATURE NEUROSCIENCE

Predictive networks: a flexible, open source, web application for integration and analysis of human gene networks

(2011) Benjamin Haibe-Kains et al.   NUCLEIC ACIDS RESEARCH

CoP: a database for characterizing co-expressed gene modules with biological information in plants

(2010) Y. Ogata et al.   BIOINFORMATICS

Cytoscape Web: an interactive web-based network browser

(2010) Christian T. Lopes et al.   BIOINFORMATICS

Inferring large-scale gene regulatory networks using a low-order constraint-based algorithm

(2010) Mingyi Wang et al.   Molecular BioSystems

Rational association of genes with traits using a genome-scale gene network for Arabidopsis thaliana

(2010) Insuk Lee et al.   NATURE BIOTECHNOLOGY

The GeneMANIA prediction server: biological network integration for gene prioritization and predicting gene function

(2010) David Warde-Farley et al.   NUCLEIC ACIDS RESEARCH

Inferring Regulatory Networks from Expression Data Using Tree-Based Methods

(2010) Vân Anh Huynh-Thu et al.   PLoS One

Revealing strengths and weaknesses of methods for gene network inference

(2010) D. Marbach et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Medicago truncatula gene expression atlas web server

(2009) Ji He et al.   BMC BIOINFORMATICS

A Tutorial on Analysis and Simulation of Boolean Gene Regulatory Network Models

(2009) Yufei Xiao   CURRENT GENOMICS

RiceArrayNet: A Database for Correlating Gene Expression from Transcriptome Profiling, and Its Application to the Analysis of Coexpressed Genes in Rice

(2009) T.-H. Lee et al.   PLANT PHYSIOLOGY

ATTED-II provides coexpressed gene networks for Arabidopsis

(2008) T. Obayashi et al.   NUCLEIC ACIDS RESEARCH

The ArabidopsisGSQ5/DOG1Cvi allele is induced by the ABA-mediated sugar signalling pathway, and enhances sugar sensitivity by stimulatingABI4expression

(2008) Sheng Teng et al.   PLANT JOURNAL

A gene expression atlas of the model legumeMedicago truncatula

(2008) Vagner A. Benedito et al.   PLANT JOURNAL