De Novo Characterization of Japanese Scallop Mizuhopecten yessoensis Transcriptome and Analysis of Its Gene Expression following Cadmium Exposure

Oases: robust de novo RNA-seq assembly across the dynamic range of expression levels

(2012) Marcel H. Schulz et al.   BIOINFORMATICS

Molecular cloning, characterization and expression analysis of tumor necrosis factor receptor-associated factor 3 (TRAF3) from pearl oyster Pinctada fucata

(2012) Xian-De Huang et al.   FISH & SHELLFISH IMMUNOLOGY

Characterization of Common Carp Transcriptome: Sequencing, De Novo Assembly, Annotation and Comparative Genomics

(2012) Peifeng Ji et al.   PLoS One

Transcriptomics of In Vitro Immune-Stimulated Hemocytes from the Manila Clam Ruditapes philippinarum Using High-Throughput Sequencing

(2012) Rebeca Moreira et al.   PLoS One

DNA damage in the gill cells of the marine scallop Mizuhopecten yessoensis during anoxic stress and aerobic recovery

(2012) Valentina V. Slobodskova et al.   Ocean Science Journal

Transcriptome sequencing and microarray development for the Manila clam, Ruditapes philippinarum: genomic tools for environmental monitoring

(2011) Massimo Milan et al.   BMC GENOMICS

A selenium-dependent glutathione peroxidase in the Japanese scallop, Mizuhopecten yessoensis: cDNA cloning, promoter sequence analysis and mRNA expression

(2011) Zhongguo Shan et al.   COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY B-BIOCHEMISTRY & MOLECULAR BIOLOGY

Roles of tumor necrosis factor receptor associated factor 3 (TRAF3) and TRAF5 in immune cell functions

(2011) Joanne M. Hildebrand et al.   IMMUNOLOGICAL REVIEWS

The First Set of EST-derived Single Nucleotide Polymorphism Markers for Japanese Scallop, Patinopecten yessoensis

(2011) Weidong Liu et al.   JOURNAL OF THE WORLD AQUACULTURE SOCIETY

Transcriptome Sequencing and De Novo Analysis for Yesso Scallop (Patinopecten yessoensis) Using 454 GS FLX

(2011) Rui Hou et al.   PLoS One

Discovery of host defence genes in the Japanese scallop Mizuhopecten yessoensis Jay by expressed sequence tag analysis of kidney tissue

(2010) Weidong Liu et al.   AQUACULTURE RESEARCH

Assessment of Metallothioneins in Tissues of the Clam Megapitaria squalida as Biomarkers for Environmental Cadmium Pollution From Areas Enriched in Phosphorite

(2010) Cristina Escobedo-Fregoso et al.   ARCHIVES OF ENVIRONMENTAL CONTAMINATION AND TOXICOLOGY

De novo characterization of a whitefly transcriptome and analysis of its gene expression during development

(2010) Xiao-Wei Wang et al.   BMC GENOMICS

Deep sequencing-based transcriptome profiling analysis of bacteria-challenged Lateolabrax japonicus reveals insight into the immune-relevant genes in marine fish

(2010) Li-xin Xiang et al.   BMC GENOMICS

Heat shock proteins in toxicology: How close and how far?

(2010) Subash C. Gupta et al.   LIFE SCIENCES

Evolution of the Insect Yellow Gene Family

(2010) L. C. Ferguson et al.   MOLECULAR BIOLOGY AND EVOLUTION

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

DEGseq: an R package for identifying differentially expressed genes from RNA-seq data

(2009) Likun Wang et al.   BIOINFORMATICS

Expression of GIMAP1, a GTPase of the immunity-associated protein family, is not up-regulated in malaria

(2009) Amy Saunders et al.   MALARIA JOURNAL

Deep sequencing of the zebrafish transcriptome response to mycobacterium infection

(2009) Zoltán Hegedűs et al.   MOLECULAR IMMUNOLOGY

The sequence and de novo assembly of the giant panda genome

(2009) Ruiqiang Li et al.   NATURE

KEGG for representation and analysis of molecular networks involving diseases and drugs

(2009) Minoru Kanehisa et al.   NUCLEIC ACIDS RESEARCH

A first-generation genetic map of the Japanese scallopPatinopecten yessoensis-based AFLP and microsatellite markers

(2008) Kefeng Xu et al.   AQUACULTURE RESEARCH

Transcriptome profiling of developmental and xenobiotic responses in a keystone soil animal, the oligochaete annelid Lumbricus rubellus

(2008) Jennifer Owen et al.   BMC GENOMICS

Development of EST-SSRs in scallop (Patinopecten yessoensis) from sequence database

(2008) Xiuli Wang et al.   CONSERVATION GENETICS

Biochemical biomarkers in algae and marine pollution: A review

(2008) Moacir A. Torres et al.   ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY

RNA-seq: An assessment of technical reproducibility and comparison with gene expression arrays

(2008) J. C. Marioni et al.   GENOME RESEARCH

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH

Mapping and quantifying mammalian transcriptomes by RNA-Seq

(2008) Ali Mortazavi et al.   NATURE METHODS