FFPred 2.0: Improved Homology-Independent Prediction of Gene Ontology Terms for Eukaryotic Protein Sequences

Protein function prediction by massive integration of evolutionary analyses and multiple data sources

(2013) Domenico Cozzetto et al.   BMC BIOINFORMATICS

The use of evolutionary patterns in protein annotation

(2012) Angela D. Wilkins et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

An integrated encyclopedia of DNA elements in the human genome

(2012)   NATURE

Combining many interaction networks to predict gene function and analyze gene lists

(2012) Sara Mostafavi et al.   PROTEOMICS

Initial impact of the sequencing of the human genome

(2011) Eric S. Lander   NATURE

SignalP 4.0: discriminating signal peptides from transmembrane regions

(2011) Thomas Nordahl Petersen et al.   NATURE METHODS

Reorganizing the protein space at the Universal Protein Resource (UniProt)

(2011)   NUCLEIC ACIDS RESEARCH

Protein annotation and modelling servers at University College London

(2010) D. W. A. Buchan et al.   NUCLEIC ACIDS RESEARCH

The use of gene ontology evidence codes in preventing classifier assessment bias

(2009) Mark F. Rogers et al.   BIOINFORMATICS

Transmembrane protein topology prediction using support vector machines

(2009) Timothy Nugent et al.   BMC BIOINFORMATICS

Sequence-based feature prediction and annotation of proteins

(2009) Agnieszka S Juncker et al.   GENOME BIOLOGY

Metrics for GO based protein semantic similarity: a systematic evaluation

(2008) Catia Pesquita et al.   BMC BIOINFORMATICS

Alternative isoform regulation in human tissue transcriptomes

(2008) Eric T. Wang et al.   NATURE

FFPred: an integrated feature-based function prediction server for vertebrate proteomes

(2008) A. E. Lobley et al.   NUCLEIC ACIDS RESEARCH

The GOA database in 2009--an integrated Gene Ontology Annotation resource

(2008) D. Barrell et al.   NUCLEIC ACIDS RESEARCH