Approximate Subgraph Matching-Based Literature Mining for Biomedical Events and Relations

A robust approach to extract biomedical events from literature

(2012) Q.-C. Bui et al.   BIOINFORMATICS

University of Turku in the BioNLP'11 Shared Task

(2012) Jari Björne et al.   BMC BIOINFORMATICS

Biological event composition

(2012) Halil Kilicoglu et al.   BMC BIOINFORMATICS

A corpus of full-text journal articles is a robust evaluation tool for revealing differences in performance of biomedical natural language processing tools

(2012) Karin Verspoor et al.   BMC BIOINFORMATICS

Combining joint models for biomedical event extraction

(2012) David McClosky et al.   BMC BIOINFORMATICS

Tree kernel-based protein–protein interaction extraction from biomedical literature

(2012) Longhua Qian et al.   JOURNAL OF BIOMEDICAL INFORMATICS

Text Mining Improves Prediction of Protein Functional Sites

(2012) Karin M. Verspoor et al.   PLoS One

BioLemmatizer: a lemmatization tool for morphological processing of biomedical text

(2012) Haibin Liu et al.   Journal of Biomedical Semantics

OntoGene in BioCreative II.5

(2010) F Rinaldi et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

Event extraction for systems biology by text mining the literature

(2010) Sophia Ananiadou et al.   TRENDS IN BIOTECHNOLOGY

A Comprehensive Benchmark of Kernel Methods to Extract Protein–Protein Interactions from Literature

(2010) Domonkos Tikk et al.   PLoS Computational Biology

EVENT EXTRACTION WITH COMPLEX EVENT CLASSIFICATION USING RICH FEATURES

(2010) MAKOTO MIWA et al.   Journal of Bioinformatics and Computational Biology

Annotation of protein residues based on a literature analysis: cross-validation against UniProtKb

(2009) Kevin Nagel et al.   BMC BIOINFORMATICS

Evaluating contributions of natural language parsers to protein-protein interaction extraction

(2008) Y. Miyao et al.   BIOINFORMATICS

All-paths graph kernel for protein-protein interaction extraction with evaluation of cross-corpus learning

(2008) Antti Airola et al.   BMC BIOINFORMATICS

From protein-disease associations to disease informatics

(2008) Mehmet et al.   Frontiers in Bioscience-Landmark