Characterization and Expression Patterns of microRNAs Involved in Rice Grain Filling

Identification of novel MiRNAs and MiRNA expression profiling during grain development in indica rice

(2012) Ying Lan et al.   BMC GENOMICS

Functions of microRNAs in plant stress responses

(2012) Ramanjulu Sunkar et al.   TRENDS IN PLANT SCIENCE

Comprehensive analysis of mammalian miRNA* species and their role in myeloid cells

(2011) F. Kuchenbauer et al.   BLOOD

Multiple roles for small RNAs during plant reproduction

(2011) Frédéric Van Ex et al.   CURRENT OPINION IN PLANT BIOLOGY

Post-anthesis alternate wetting and moderate soil drying enhances activities of key enzymes in sucrose-to-starch conversion in inferior spikelets of rice

(2011) Hao Zhang et al.   JOURNAL OF EXPERIMENTAL BOTANY

Differential expression of the microRNAs in superior and inferior spikelets in rice (Oryza sativa)

(2011) Ting Peng et al.   JOURNAL OF EXPERIMENTAL BOTANY

Regulation of expression of starch synthesis genes by ethylene and ABA in relation to the development of rice inferior and superior spikelets

(2011) Guohui Zhu et al.   JOURNAL OF EXPERIMENTAL BOTANY

Arabidopsis Argonaute 2 Regulates Innate Immunity via miRNA393∗-Mediated Silencing of a Golgi-Localized SNARE Gene, MEMB12

(2011) Xiaoming Zhang et al.   MOLECULAR CELL

Natural variation in GS5 plays an important role in regulating grain size and yield in rice

(2011) Yibo Li et al.   NATURE GENETICS

SeqTar: an effective method for identifying microRNA guided cleavage sites from degradome of polyadenylated transcripts in plants

(2011) Yun Zheng et al.   NUCLEIC ACIDS RESEARCH

Massive Analysis of Rice Small RNAs: Mechanistic Implications of Regulated MicroRNAs and Variants for Differential Target RNA Cleavage

(2011) D.-H. Jeong et al.   PLANT CELL

Roles of DCL4 and DCL3b in rice phased small RNA biogenesis

(2011) Xianwei Song et al.   PLANT JOURNAL

Stars and Symbiosis: MicroRNA- and MicroRNA*-Mediated Transcript Cleavage Involved in Arbuscular Mycorrhizal Symbiosis

(2011) E. A. Devers et al.   PLANT PHYSIOLOGY

Small RNA Profiling in Two Brassica napus Cultivars Identifies MicroRNAs with Oil Production- and Development-Correlated Expression and New Small RNA Classes

(2011) Y.-T. Zhao et al.   PLANT PHYSIOLOGY

Identification and Characterization of NF-Y Transcription Factor Families in the Monocot Model Plant Brachypodium distachyon

(2011) Shuanghe Cao et al.   PLoS One

Genome-wide discovery and analysis of microRNAs and other small RNAs from rice embryogenic callus

(2011) Chong-Jian Chen et al.   RNA Biology

Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa

(2011) Li Wei et al.   GENOME BIOLOGY

microRNA, seeds, and Darwin?: diverse function of miRNA in seed biology and plant responses to stress

(2010) R. C. Martin et al.   JOURNAL OF EXPERIMENTAL BOTANY

High-throughput degradome sequencing can be used to gain insights into microRNA precursor metabolism

(2010) Y. Meng et al.   JOURNAL OF EXPERIMENTAL BOTANY

Involvement of cytokinins in the grain filling of rice under alternate wetting and drying irrigation

(2010) Hao Zhang et al.   JOURNAL OF EXPERIMENTAL BOTANY

Regulation of OsSPL14 by OsmiR156 defines ideal plant architecture in rice

(2010) Yongqing Jiao et al.   NATURE GENETICS

OsSPL14 promotes panicle branching and higher grain productivity in rice

(2010) Kotaro Miura et al.   NATURE GENETICS

Identification and analysis of seven H2O2-responsive miRNAs and 32 new miRNAs in the seedlings of rice (Oryza sativa L. ssp. indica)

(2010) Tian Li et al.   NUCLEIC ACIDS RESEARCH

starBase: a database for exploring microRNA–mRNA interaction maps from Argonaute CLIP-Seq and Degradome-Seq data

(2010) Jian-Hua Yang et al.   NUCLEIC ACIDS RESEARCH

miR390,Arabidopsis TAS3tasiRNAs, and TheirAUXIN RESPONSE FACTORTargets Define an Autoregulatory Network Quantitatively Regulating Lateral Root Growth

(2010) Elena Marin et al.   PLANT CELL

Transcriptome-wide identification of microRNA targets in rice

(2010) Yong-Fang Li et al.   PLANT JOURNAL

Small RNAs and Their Roles in Plant Development

(2009) Xuemei Chen   Annual Review of Cell and Developmental Biology

Insights into the mechanism of plant development: Interactions of miRNAs pathway with phytohormone response

(2009) Qing Liu et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Origin, Biogenesis, and Activity of Plant MicroRNAs

(2009) Olivier Voinnet   CELL

Small RNA Diversity in Plants and its Impact in Development

(2009) Christine Lelandais-Briere et al.   CURRENT GENOMICS

The effect of sucrose and abscisic acid interaction on sucrose synthase and its relationship to grain filling of rice (Oryza sativa L.)

(2009) T. Tang et al.   JOURNAL OF EXPERIMENTAL BOTANY

Grain-filling problem in ‘super’ rice

(2009) Jianchang Yang et al.   JOURNAL OF EXPERIMENTAL BOTANY

Recent advances and emerging trends in plant hormone signalling

(2009) Aaron Santner et al.   NATURE

Rice MicroRNA Effector Complexes and Targets

(2009) L. Wu et al.   PLANT CELL

Methyl Jasmonate Reduces Grain Yield by Mediating Stress Signals to Alter Spikelet Development in Rice

(2009) E. H. Kim et al.   PLANT PHYSIOLOGY

Uncovering Small RNA-Mediated Responses to Phosphate Deficiency in Arabidopsis by Deep Sequencing

(2009) L.-C. Hsieh et al.   PLANT PHYSIOLOGY

Not just a grain of rice: the quest for quality

(2009) Melissa A. Fitzgerald et al.   TRENDS IN PLANT SCIENCE

SOAP: short oligonucleotide alignment program

(2008) R. Li et al.   BIOINFORMATICS

Identifying and exploiting grain yield genes in rice

(2008) Tomoaki Sakamoto et al.   CURRENT OPINION IN PLANT BIOLOGY

Big impacts by small RNAs in plant development

(2008) George Chuck et al.   CURRENT OPINION IN PLANT BIOLOGY

A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains

(2008) Q.-H. Zhu et al.   GENOME RESEARCH

Control of rice grain-filling and yield by a gene with a potential signature of domestication

(2008) Ertao Wang et al.   NATURE GENETICS

The regulatory activity of microRNA* species has substantial influence on microRNA and 3′ UTR evolution

(2008) Katsutomo Okamura et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Characterization and expression profiles of miRNAs in rice seeds

(2008) Liang-Jiao Xue et al.   NUCLEIC ACIDS RESEARCH

Rfam: updates to the RNA families database

(2008) P. P. Gardner et al.   NUCLEIC ACIDS RESEARCH

Brassinosteroids Regulate Grain Filling in Rice

(2008) C.-y. Wu et al.   PLANT CELL

Criteria for Annotation of Plant MicroRNAs

(2008) B. C. Meyers et al.   PLANT CELL

Dynamic Proteomic Analysis Reveals a Switch between Central Carbon Metabolism and Alcoholic Fermentation in Rice Filling Grains

(2008) S. B. Xu et al.   PLANT PHYSIOLOGY

Hormones in the grains and roots in relation to post-anthesis development of inferior and superior spikelets in japonica/indica hybrid rice

(2008) Hao Zhang et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Starch synthesizing enzymes and sink strength of grains of contrasting rice cultivars

(2008) P.K. Mohapatra et al.   PLANT SCIENCE

Control of Jasmonate Biosynthesis and Senescence by miR319 Targets

(2008) Carla Schommer et al.   PLOS BIOLOGY