Causes and Implications of Codon Usage Bias in RNA Viruses

The anti-Shine–Dalgarno sequence drives translational pausing and codon choice in bacteria

(2012) Gene-Wei Li et al.   NATURE

RNA editing of protein sequences: A rare event in human transcriptomes

(2012) C. L. Kleinman et al.   RNA

Widespread RNA and DNA Sequence Differences in the Human Transcriptome

(2011) M. Li et al.   SCIENCE

Human DNA methylomes at base resolution show widespread epigenomic differences

(2009) Ryan Lister et al.   NATURE

A new type of IRES within gag coding region recruits three initiation complexes on HIV-2 genomic RNA

(2009) Laure Weill et al.   NUCLEIC ACIDS RESEARCH

Patterns of Oligonucleotide Sequences in Viral and Host Cell RNA Identify Mediators of the Host Innate Immune System

(2009) Benjamin D. Greenbaum et al.   PLoS One

Selection on Codon Bias

(2008) Ruth Hershberg et al.   Annual Review of Genetics

Synonymous Mutations and Ribosome Stalling Can Lead to Altered Folding Pathways and Distinct Minima

(2008) Chung-Jung Tsai et al.   JOURNAL OF MOLECULAR BIOLOGY

Cis-active RNA elements (CREs) and picornavirus RNA replication

(2008) Benjamin P. Steil et al.   VIRUS RESEARCH

Patterns of Evolution and Host Gene Mimicry in Influenza and Other RNA Viruses

(2008) Benjamin D. Greenbaum et al.   PLoS Pathogens