Structural and Functional Analysis of Multi-Interface Domains

Composite Structural Motifs of Binding Sites for Delineating Biological Functions of Proteins

(2012) Akira R. Kinjo et al.   PLoS One

A Comparative Analysis of Protein Interfaces

(2012) Jing Hu et al.   PROTEIN AND PEPTIDE LETTERS

Antibody-Specified B-Cell Epitope Prediction in Line with the Principle of Context-Awareness

(2011) Liang Zhao et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

A Multiprotein Binding Interface in an Intrinsically Disordered Region of the Tumor Suppressor Protein Interferon Regulatory Factor-1

(2011) Vikram Narayan et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Distinct Roles of Overlapping and Non-overlapping Regions of Hub Protein Interfaces in Recognition of Multiple Partners

(2011) Bhaskar Dasgupta et al.   JOURNAL OF MOLECULAR BIOLOGY

Preferential use of protein domain pairs as interaction mediators: order and transitivity

(2010) Zohar Itzhaki et al.   BIOINFORMATICS

Geometric Similarities of Protein–Protein Interfaces at Atomic Resolution Are Only Observed within Homologous Families: An Exhaustive Structural Classification Study

(2010) Akira R. Kinjo et al.   JOURNAL OF MOLECULAR BIOLOGY

ANCHOR: a web server and database for analysis of protein-protein interaction binding pockets for drug discovery

(2010) L. M. C. Meireles et al.   NUCLEIC ACIDS RESEARCH

Engineering a protein-protein interface using a computationally designed library

(2010) G. Guntas et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Comparative analysis and unification of domain–domain interaction networks

(2009) Patrik Björkholm et al.   BIOINFORMATICS

Exploring functional roles of multibinding protein interfaces

(2009) Manoj Tyagi et al.   PROTEIN SCIENCE

Human Cancer Protein-Protein Interaction Network: A Structural Perspective

(2009) Gozde Kar et al.   PLoS Computational Biology

Regulation of Protein Function: Crystal Packing Interfaces and Conformational Dimerization†‡

(2008) Peter B. Crowley et al.   BIOCHEMISTRY

Protein complex identification by supervised graph local clustering

(2008) Y. Qi et al.   BIOINFORMATICS

Principles of Protein−Protein Interactions: What are the Preferred Ways For Proteins To Interact?

(2008) Ozlem Keskin et al.   CHEMICAL REVIEWS

MultiBind and MAPPIS: webservers for multiple alignment of protein 3D-binding sites and their interactions

(2008) A. Shulman-Peleg et al.   NUCLEIC ACIDS RESEARCH

NCBI BLAST: a better web interface

(2008) M. Johnson et al.   NUCLEIC ACIDS RESEARCH

PharmaGist: a webserver for ligand-based pharmacophore detection

(2008) D. Schneidman-Duhovny et al.   NUCLEIC ACIDS RESEARCH

Design of protein function leaps by directed domain interface evolution

(2008) J. Huang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Surface Sites for Engineering Allosteric Control in Proteins

(2008) J. Lee et al.   SCIENCE