Identification of Novel and Differentially Expressed MicroRNAs of Dairy Goat Mammary Gland Tissues Using Solexa Sequencing and Bioinformatics

MicroRNA-148a Promotes Myogenic Differentiation by Targeting the ROCK1 Gene

(2012) Jing Zhang et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Computational Identification of MicroRNAs in Strawberry Expressed Sequence Tags and Validation of Their Precise Sequences by miR-RACE

(2012) Qing-Hua Dong et al.   JOURNAL OF HEREDITY

Performance comparison and evaluation of software tools for microRNA deep-sequencing data analysis

(2012) Yue Li et al.   NUCLEIC ACIDS RESEARCH

Solexa Sequencing Identification of Conserved and Novel microRNAs in Backfat of Large White and Chinese Meishan Pigs

(2012) Chen Chen et al.   PLoS One

A systematic analysis of the skeletal muscle miRNA transcriptome of chicken varieties with divergent skeletal muscle growth identifies novel miRNAs and differentially expressed miRNAs

(2011) Tingting Li et al.   BMC GENOMICS

MicroRNA identity and abundance in developing swine adipose tissue as determined by solexa sequencing

(2011) Guoxi Li et al.   JOURNAL OF CELLULAR BIOCHEMISTRY

MicroRNA-148a is down-regulated in human pancreatic ductal adenocarcinomas and regulates cell survival by targeting CDC25B

(2011) Sven-T Liffers et al.   LABORATORY INVESTIGATION

KEGG for integration and interpretation of large-scale molecular data sets

(2011) M. Kanehisa et al.   NUCLEIC ACIDS RESEARCH

Identification of a Novel Marine Fish Virus, Singapore Grouper Iridovirus-Encoded MicroRNAs Expressed in Grouper Cells by Solexa Sequencing

(2011) Yang Yan et al.   PLoS One

miR-143 Overexpression Impairs Growth of Human Colon Carcinoma Xenografts in Mice with Induction of Apoptosis and Inhibition of Proliferation

(2011) Pedro M. Borralho et al.   PLoS One

Identification and functional annotation of novel microRNAs in the proximal sciatic nerve after sciatic nerve transection

(2011) ShiYing Li et al.   Science China-Life Sciences

The sheep genome reference sequence: a work in progress

(2010) et al.   ANIMAL GENETICS

MicroRNAs: Synthesis, mechanism, function, and recent clinical trials

(2010) Fazli Wahid et al.   BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR CELL RESEARCH

Cytoscape 2.8: new features for data integration and network visualization

(2010) M. E. Smoot et al.   BIOINFORMATICS

MicroRNAs of Bombyx mori identified by Solexa sequencing

(2010) Shiping Liu et al.   BMC GENOMICS

Deep sequencing identifies novel and conserved microRNAs in peanuts (Arachis hypogaea L.)

(2010) Chuan-Zhi Zhao et al.   BMC PLANT BIOLOGY

miR-212 and miR-132 are required for epithelial stromal interactions necessary for mouse mammary gland development

(2010) Ahmet Ucar et al.   NATURE GENETICS

miRBase: integrating microRNA annotation and deep-sequencing data

(2010) A. Kozomara et al.   NUCLEIC ACIDS RESEARCH

ClueGO: a Cytoscape plug-in to decipher functionally grouped gene ontology and pathway annotation networks

(2009) Gabriela Bindea et al.   BIOINFORMATICS

A microRNA, miR-101a, controls mammary gland development by regulating cyclooxygenase-2 expression

(2009) Tetsuya Tanaka et al.   DIFFERENTIATION

High throughput sequencing of microRNAs in chicken somites

(2009) Tina Rathjen et al.   FEBS LETTERS

Large-scale genome analysis reveals unique features of microRNAs

(2009) Baohong Zhang et al.   GENE

Role of miR-143 targeting KRAS in colorectal tumorigenesis

(2009) X Chen et al.   ONCOGENE

Characterization and comparative profiling of the small RNA transcriptomes in two phases of locust

(2009) Yuanyuan Wei et al.   GENOME BIOLOGY

Identification and characterization of novel amphioxus microRNAs by Solexa sequencing

(2009) Xi Chen et al.   GENOME BIOLOGY

AmiGO: online access to ontology and annotation data

(2008) Seth Carbon et al.   BIOINFORMATICS

SOAP: short oligonucleotide alignment program

(2008) R. Li et al.   BIOINFORMATICS

RNA-seq: An assessment of technical reproducibility and comparison with gene expression arrays

(2008) J. C. Marioni et al.   GENOME RESEARCH

Applications of next-generation sequencing technologies in functional genomics

(2008) Olena Morozova et al.   GENOMICS