4.6 Article

Wnt Signalling Pathway Parameters for Mammalian Cells

期刊

PLOS ONE
卷 7, 期 2, 页码 -

出版社

PUBLIC LIBRARY SCIENCE
DOI: 10.1371/journal.pone.0031882

关键词

-

资金

  1. National Health and Medical Research Council (NHMRC) [542531]
  2. Victorian Government, Australia
  3. Program Grant [487922]

向作者/读者索取更多资源

Wnt/beta-catenin signalling regulates cell fate, survival, proliferation and differentiation at many stages of mammalian development and pathology. Mutations of two key proteins in the pathway, APC and beta-catenin, have been implicated in a range of cancers, including colorectal cancer. Activation of Wnt signalling has been associated with the stabilization and nuclear accumulation of beta-catenin and consequential up-regulation of beta-catenin/TCF gene transcription. In 2003, Lee et al. constructed a computational model of Wnt signalling supported by experimental data from analysis of time-dependent concentration of Wnt signalling proteins in Xenopus egg extracts. Subsequent studies have used the Xenopus quantitative data to infer Wnt pathway dynamics in other systems. As a basis for understanding Wnt signalling in mammalian cells, a confocal live cell imaging measurement technique is developed to measure the cell and nuclear volumes of MDCK, HEK293T cells and 3 human colorectal cancer cell lines and the concentrations of Wnt signalling proteins beta-catenin, Axin, APC, GSK3 beta and E-cadherin. These parameters provide the basis for formulating Wnt signalling models for kidney/intestinal epithelial mammalian cells. There are significant differences in concentrations of key proteins between Xenopus extracts and mammalian whole cell lysates. Higher concentrations of Axin and lower concentrations of APC are present in mammalian cells. Axin concentrations are greater than APC in kidney epithelial cells, whereas in intestinal epithelial cells the APC concentration is higher than Axin. Computational simulations based on Lee's model, with this new data, suggest a need for a recalibration of the model. A quantitative understanding of Wnt signalling in mammalian cells, in particular human colorectal cancers requires a detailed understanding of the concentrations of key protein complexes over time. Simulations of Wnt signalling in mammalian cells can be initiated with the parameters measured in this report.

作者

我是这篇论文的作者
点击您的名字以认领此论文并将其添加到您的个人资料中。

评论

主要评分

4.6
评分不足

次要评分

新颖性
-
重要性
-
科学严谨性
-
评价这篇论文

推荐

Article Engineering, Mechanical

Investigation of role of cartilage surface polymer brush border in lubrication of biological joints

JinJing Liao, David W. Smith, Saeed Miramini, Bruce S. Gardiner, Lihai Zhang

Summary: This study developed a multiscale cartilage contact model to investigate the effect of the polymer brush border (PBB) on fluid permeability and lubrication in cartilage. The results showed that PBB can enhance cartilage lubrication by increasing gap fluid load support, reduce fluid flow resistance, and minimize vertical deformation of the tissue. Additionally, reducing PBB thickness was found to impair cartilage lubrication ability.

FRICTION (2022)

Article Cell Biology

Preclinical small molecule WEHI-7326 overcomes drug resistance and elicits response in patient-derived xenograft models of human treatment-refractory tumors

Christoph Grohmann, Francesca Walker, Mark Devlin, Meng-Xiao Luo, Anderly C. Chueh, Judy Doherty, Francois Vaillant, Gwo-Yaw Ho, Matthew J. Wakefield, Clare E. Weeden, Alvin Kamili, Jayne Murray, Sela T. Po'uha, Janet Weinstock, Serena R. Kane, Maree C. Faux, Esmee Broekhuizen, Ye Zheng, Kristy Shield-Artin, Nadia J. Kershaw, Chin Wee Tan, Helen M. Witchard, Gregor Ebert, Susan A. Charman, Ian Street, Maria Kavallaris, Michelle Haber, Jamie I. Fletcher, Marie-Liesse Asselin-Labat, Clare L. Scott, Jane E. Visvader, Geoffrey J. Lindeman, Keith G. Watson, Antony W. Burgess, Guillaume Lessene

Summary: Targeting cell division by the new small molecule WEHI-7326 shows promising anti-tumor activity with broad-spectrum efficacy, providing a potential new therapeutic option for cancer patients.

CELL DEATH & DISEASE (2021)

Article Computer Science, Interdisciplinary Applications

A Probabilistic Failure Risk Approach to The Problem of Articular Cartilage Lubrication

JinJing Liao, David W. Smith, Saeed Miramini, Bruce S. Gardiner, Lihai Zhang

Summary: Using a probabilistic approach, this study investigates the influence of surficial cartilage glycoaminoglycan (GAG) content on joint lubrication behavior. The increase of polymer brush border (PBB) thickness enhances hydrodynamic lubrication in the cartilage contact gap, while increasing gap asperity stiffness impairs lubrication. The lubrication performance of cartilage varies with physiological conditions, making the outcomes on joint lubrication difficult to predict.

COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE (2021)

Article Oncology

SOX9 Defines Distinct Populations of Cells in SHH Medulloblastoma but Is Not Required for Math1-Driven Tumor Formation

Christelle Adolphe, Amanda Millar, Marija Kojic, Deborah S. Barkauskas, Anders Sundstrom, Fredrik J. Swartling, Soroor Hediyeh-Zadeh, Chin Wee Tan, Melissa J. Davis, Laura A. Genovesi, Brandon J. Wainwright

Summary: Research reveals three distinct populations of SOX9 in medulloblastoma, with SOX9 potentially playing a key role in SHH-MB initiation in GCP cells. However, SOX9 is not essential for tumorigenesis in medulloblastoma.

MOLECULAR CANCER RESEARCH (2021)

Article Biology

Low-viscosity matrix suspension culture enables scalable analysis of patient-derived organoids and tumoroids from the large intestine

Yumiko Hirokawa, Jordan Clarke, Michelle Palmieri, Tao Tan, Dmitri Mouradov, Shan Li, Cong Lin, Fuqiang Li, Huijuan Luo, Kui Wu, Maree Faux, Chin Wee Tan, Margaret Lee, Grace Gard, Peter Gibbs, Antony W. Burgess, Oliver M. Sieber

Summary: The low-viscosity matrix (LVM) suspension culture method allows efficient establishment and propagation of human large intestine organoids and tumoroids, recapitulating morphological development and enabling high-throughput drug sensitivity testing for tumoroids.

COMMUNICATIONS BIOLOGY (2021)

Article Respiratory System

Profiling of lung SARS-CoV-2 and influenza virus infection dissects virus-specific host responses and gene signatures

Arutha Kulasinghe, Chin Wee Tan, Anna Flavia Ribeiro Dos Santos Miggiolaro, James Monkman, Habib SadeghiRad, Dharmesh D. Bhuva, Jarbas da Silva Motta Junior, Caroline Busatta Vaz de Paula, Seigo Nagashima, Cristina Pellegrino Baena, Paulo Souza-Fonseca-Guimaraes, Lucia de Noronha, Timothy McCulloch, Gustavo Rodrigues Rossi, Caroline Cooper, Benjamin Tang, Kirsty R. Short, Melissa J. Davis, Fernando Souza-Fonseca-Guimaraes, Gabrielle T. Belz, Ken O'Byrne

Summary: Spatial transcriptomics is a powerful tool to identify novel gene signatures within tissues, offering new insights into the pathogenesis of SARS-COV-2 to aid in patient triage and treatment. This study used targeted transcriptomics of formalin-fixed paraffin-embedded tissue to examine the pulmonary transcriptional landscape of COVID-19 patients. The results showed significant upregulation of genes associated with inflammation, type I interferon production, coagulation, and angiogenesis in the lungs of COVID-19 patients compared to non-infected controls. Additionally, the study found that the gene IFI27, previously identified as a useful blood biomarker for differentiating bacterial and viral lung infections, was significantly upregulated in the lungs of COVID-19 patients compared to patients with influenza.

EUROPEAN RESPIRATORY JOURNAL (2022)

Editorial Material Cell Biology

Transplantable programmed death ligand 1 expressing gastroids from gastric cancer prone Nfkb1-/- mice

Jun T. Low, Gwo-Yaw Ho, Mark Scott, Chin Wee Tan, Lachlan Whitehead, Kathy Barber, Hon Y. K. Yip, Johanna F. Dekkers, Yumiko Hirokawa, John Silke, Antony W. Burgess, Andreas Strasser, Tracy L. Putoczki, Lorraine A. O'Reilly

CELL DEATH & DISEASE (2021)

Article Multidisciplinary Sciences

Dissection of the bone marrow microenvironment in hairy cell leukaemia identifies prognostic tumour and immune related biomarkers

Rachel M. Koldej, Ashvind Prabahran, Chin Wee Tan, Ashley P. Ng, Melissa J. Davis, David S. Ritchie

Summary: HCL is a rare B cell malignancy characterized by hairy B cells and extensive BM infiltration. Treatment with CDA leads to variable response duration. Analysis of the BM microenvironment identified prognostic biomarkers of response to CDA, with dysregulated expression of immune markers pre- and post-CDA treatment. Duration of response was associated with reduction in tumor burden and increased CD8 T cell infiltration into the BM post-CDA.

SCIENTIFIC REPORTS (2021)

Review Medicine, Research & Experimental

Spatial composition and turnover of the main molecules in the adult glomerular basement membrane

David W. Smith, Azin Azadi, Chang-Joon Lee, Bruce S. Gardiner

Summary: This review focuses on the spatial location and dynamics of the main extracellular matrix components of the glomerular basement membrane (GBM). It explains the slow dynamic disequilibrium of collagen IV and laminin content, leading to GBM thickening, as well as the rapid turnover of heparan sulfate proteoglycans against the flow of filtrate. The highly rapid turnover of heparan sulfate may serve various functions, such as unclogging the GBM, providing compressive stiffness, and facilitating cell-cell communication.

TISSUE BARRIERS (2023)

Article Immunology

Transcriptomic profiling of cardiac tissues from SARS-CoV-2 patients identifies DNA damage

Arutha Kulasinghe, Ning Liu, Chin Wee Tan, James Monkman, Jane E. Sinclair, Dharmesh D. Bhuva, David Godbolt, Liuliu Pan, Andy Nam, Habib Sadeghirad, Kei Sato, Gianluigi Li Bassi, Ken O'Byrne, Camila Hartmann, Anna Flavia Ribeiro Dos Santos Miggiolaro, Gustavo Lenci Marques, Lidia Zytynski Moura, Derek Richard, Mark Adams, Lucia de Noronha, Cristina Pellegrino Baena, Jacky Y. Suen, Rakesh Arora, Gabrielle T. Belz, Kirsty R. Short, Melissa J. Davis, Fernando Souza-Fonseca Guimaraes, John F. Fraser

Summary: The study reveals distinct transcriptomic profiles in cardiac tissues of SARS-CoV-2 and pH1N1 influenza infection, with upregulation of genes associated with DNA damage and repair, heat shock, and macrophage infiltration in COVID-19 patients' cardiac tissues. In comparison, pH1N1 infection showed upregulation of interferon and complement pathways. This highlights the need for further understanding of the effects on extra-pulmonary organs, including the cardiovascular system, in COVID-19 patients.

IMMUNOLOGY (2023)

Article Immunology

IFI27 transcription is an early predictor for COVID-19 outcomes, a multi-cohort observational study

Maryam Shojaei, Amir Shamshirian, James Monkman, Laura Grice, Minh Tran, Chin Wee Tan, Siok Min Teo, Gustavo Rodrigues Rossi, Timothy R. McCulloch, Marek Nalos, Maedeh Raei, Alireza Razavi, Roya Ghasemian, Mobina Gheibi, Fatemeh Roozbeh, Peter D. Sly, Kirsten M. Spann, Keng Yih Chew, Yanshan Zhu, Yao Xia, Timothy J. Wells, Alexandra Cristina Senegaglia, Carmen Lucia Kuniyoshi, Claudio Luciano Franck, Anna Flavia Ribeiro dos Santos, Lucia de Noronha, Sepideh Motamen, Reza Valadan, Omolbanin Amjadi, Rajan Gogna, Esha Madan, Reza Alizadeh-Navaei, Liliana Lamperti, Felipe Zuniga, Estefania Nova-Lamperti, Gonzalo Labarca, Ben Knippenberg, Velma Herwanto, Ya Wang, Amy Phu, Tracy Chew, Timothy Kwan, Karan Kim, Sally Teoh, Tiana M. Pelaia, Win Sen Kuan, Yvette Jee, Jon Iredell, Ken O'Byrne, John F. Fraser, Melissa J. Davis, Gabrielle T. Belz, Majid E. Warkiani, Carlos Salomon Gallo, Fernando Souza-Fonseca-Guimaraes, Quan Nguyen, Anthony Mclean, Arutha Kulasinghe, Kirsty R. Short, Benjamin Tang

Summary: This study found that the IFI27 gene is associated with COVID-19 infection and that its expression levels in the respiratory tract and blood are correlated with viral load and infection severity. IFI27 gene family biomarkers may supplement conventional diagnostic tools in future virus pandemics.

FRONTIERS IN IMMUNOLOGY (2023)

Article Computer Science, Interdisciplinary Applications

Osteochondral junction leakage and cartilage joint lubrication

Qin Li, Saeed Miramini, David W. Smith, Bruce S. Gardiner, Lihai Zhang

Summary: This study aims to develop a numerical model to investigate the effects of osteochondral junction leakage on cartilage lubrication. The results show that the permeability of the junction has a significant impact on cartilage lubrication, especially in the early stage of the disease. Increased leakage leads to a decrease in lubrication duration, shorter consolidation time, and an increase in the initial friction coefficient. These findings contribute to a better understanding of the development mechanism of cartilage disorders.

COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE (2023)

Article Physiology

Predicting oxygen tension along the ureter

Chang-Joon Lee, Bruce S. Gardiner, Roger G. Evans, David W. Smith

Summary: A computational model of oxygen exchange between urine bolus and ureteral tissue suggests that it may be possible to predict renal medullary Po-2 based on measurement of bladder urine Po-2, with bladder urine Po-2 strongly dependent on bolus volume. Changes in peristaltic frequency had minimal impact on bladder urine Po-2.

AMERICAN JOURNAL OF PHYSIOLOGY-RENAL PHYSIOLOGY (2021)

Meeting Abstract Oncology

First-in-class KAT6A/KAT6B inhibitor CTx-648 (PF-9363) demonstrates potent anti-tumor activity in ER plus breast cancer with KAT6A dysregulation.

Shikhar Sharma, Jay Chung, Sean Uryu, Amanda Rickard, Natalie Nady, Showkhin Khan, Zhenxiong Wang, Yong Zhang, Haikuo Zhang, Pei-Pei Kung, Eric Greenwald, Karen Maegley, Patrick Bingham, Hieu Lam, Ylva E. Bozikis, Hendrik Falk, Elizabeth Allan, Vicky M. Avery, Miriam S. Butler, Michelle A. Camerino, Catalina Carrasco-Pozo, Susan A. Charman, Melissa J. Davis, Mark A. Dawson, Dawson Sarah-Jane, Melanie de Silva, Matthew L. Dennis, Olan Dolezal, Rachel Lagiakos, Geoffrey J. Lindeman, Laura MacPherson, Stewart Nuttall, Thomas S. Peat, Bin Ren, Alexandra E. Stupple, Elliot Surgenor, Chin Wee Tan, Tim Thomas, Jane E. Visvader, Anne K. Voss, Francois Vaillant, Karen L. White, James Whittle, Yuqing Yang, Soroor Hediyeh-Zadeh, Paul A. Stupple, Ian P. Street, Brendon J. Monahan, Thomas Paul

CANCER RESEARCH (2021)

暂无数据