Diversity Measures in Environmental Sequences Are Highly Dependent on Alignment Quality—Data from ITS and New LSU Primers Targeting Basidiomycetes
出版年份 2012 全文链接
标题
Diversity Measures in Environmental Sequences Are Highly Dependent on Alignment Quality—Data from ITS and New LSU Primers Targeting Basidiomycetes
作者
关键词
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出版物
PLoS One
Volume 7, Issue 2, Pages e32139
出版商
Public Library of Science (PLoS)
发表日期
2012-02-22
DOI
10.1371/journal.pone.0032139
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- Intragenomic variation in the ITS rDNA region obscures phylogenetic relationships and inflates estimates of operational taxonomic units in genus Laetiporus
- (2011) Daniel L. Lindner et al. MYCOLOGIA
- Current state and perspectives of fungal DNA barcoding and rapid identification procedures
- (2010) Dominik Begerow et al. APPLIED MICROBIOLOGY AND BIOTECHNOLOGY
- An In silico approach for the evaluation of DNA barcodes
- (2010) Gentile Ficetola et al. BMC GENOMICS
- Automated Removal of Noisy Data in Phylogenomic Analyses
- (2010) Vadim V. Goremykin et al. JOURNAL OF MOLECULAR EVOLUTION
- Soil Microbial Communities Associated with Douglas-fir and Red Alder Stands at High- and Low-Productivity Forest Sites in Oregon, USA
- (2010) Stephanie A. Yarwood et al. MICROBIAL ECOLOGY
- Species abundance distributions and richness estimations in fungal metagenomics - lessons learned from community ecology
- (2010) MARTIN UNTERSEHER et al. MOLECULAR ECOLOGY
- Phylogenetic similarity and structure of Agaricomycotina communities across a forested landscape
- (2010) IVAN P. EDWARDS et al. MOLECULAR ECOLOGY
- Quantifying microbial communities with 454 pyrosequencing: does read abundance count?
- (2010) ANTHONY S. AMEND et al. MOLECULAR ECOLOGY
- An open source chimera checker for the fungal ITS region
- (2010) R. H. NILSSON et al. Molecular Ecology Resources
- The UNITE database for molecular identification of fungi - recent updates and future perspectives
- (2010) Kessy Abarenkov et al. NEW PHYTOLOGIST
- Phylogenetic assessment of alignments reveals neglected tree signal in gaps
- (2010) Christophe Dessimoz et al. GENOME BIOLOGY
- Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities
- (2009) P. D. Schloss et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Phylogenetic inference under varying proportions of indel-induced alignment gaps
- (2009) Bhakti Dwivedi et al. BMC EVOLUTIONARY BIOLOGY
- POY version 4: phylogenetic analysis using dynamic homologies
- (2009) Andrés Varón et al. CLADISTICS
- Repetitive sequence variation and dynamics in the ribosomal DNA array of Saccharomyces cerevisiae as revealed by whole-genome resequencing
- (2009) S. A. James et al. GENOME RESEARCH
- Using Data-Display Networks for Exploratory Data Analysis in Phylogenetic Studies
- (2009) D. A. Morrison MOLECULAR BIOLOGY AND EVOLUTION
- SeaView Version 4: A Multiplatform Graphical User Interface for Sequence Alignment and Phylogenetic Tree Building
- (2009) M. Gouy et al. MOLECULAR BIOLOGY AND EVOLUTION
- Progress towards DNA barcoding of fungi
- (2009) KEITH A. SEIFERT Molecular Ecology Resources
- Using heterozygosity to estimate a percentage DNA sequence similarity for environmental species’ delimitation across basidiomycete fungi
- (2009) Karen W. Hughes et al. NEW PHYTOLOGIST
- The Ascomycota Tree of Life: A Phylum-wide Phylogeny Clarifies the Origin and Evolution of Fundamental Reproductive and Ecological Traits
- (2009) Conrad L. Schoch et al. SYSTEMATIC BIOLOGY
- Mining metadata from unidentified ITS sequences in GenBank: A case study in Inocybe (Basidiomycota)
- (2008) Martin Ryberg et al. BMC EVOLUTIONARY BIOLOGY
- Fungal Taxa Target Different Carbon Sources in Forest Soil
- (2008) China A. Hanson et al. ECOSYSTEMS
- Diversity and Decomposing Ability of Saprophytic Fungi from Temperate Forest Litter
- (2008) Ariana Kubartová et al. MICROBIAL ECOLOGY
- Fruiting body and soil rDNA sampling detects complementary assemblage of Agaricomycotina (Basidiomycota, Fungi) in a hemlock-dominated forest plot in southern Ontario
- (2008) TERESITA M. PORTER et al. MOLECULAR ECOLOGY
- Spatial distribution of fungal communities in a coastal grassland soil
- (2008) Clare H. Robinson et al. SOIL BIOLOGY & BIOCHEMISTRY
- CE-SSCP and CE-FLA, simple and high-throughput alternatives for fungal diversity studies
- (2007) Lucie Zinger et al. JOURNAL OF MICROBIOLOGICAL METHODS
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