Gene Regulatory Network Reconstruction Using Bayesian Networks, the Dantzig Selector, the Lasso and Their Meta-Analysis

Regularization Paths for Generalized Linear Models via Coordinate Descent

(2015) Jerome Friedman et al.   Journal of Statistical Software

Simulating systems genetics data with SysGenSIM

(2011) A. Pinna et al.   BIOINFORMATICS

Comparative study of discretization methods of microarray data for inferring transcriptional regulatory networks

(2010) Yong Li et al.   BMC BIOINFORMATICS

Statistical inference of the time-varying structure of gene-regulation networks

(2010) Sophie Lèbre et al.   BMC Systems Biology

A global analysis of QTLs for expression variations in rice shoots at the early seedling stage

(2010) Jia Wang et al.   PLANT JOURNAL

Towards a Rigorous Assessment of Systems Biology Models: The DREAM3 Challenges

(2010) Robert J. Prill et al.   PLoS One

Inferring Regulatory Networks from Expression Data Using Tree-Based Methods

(2010) Vân Anh Huynh-Thu et al.   PLoS One

Simultaneous analysis of Lasso and Dantzig selector

(2009) Peter J. Bickel et al.   ANNALS OF STATISTICS

Replaying the Evolutionary Tape: Biomimetic Reverse Engineering of Gene Networks

(2009) Daniel Marbach et al.   Annals of the New York Academy of Sciences

Information-Theoretic Limits on Sparsity Recovery in the High-Dimensional and Noisy Setting

(2009) Martin J. Wainwright   IEEE TRANSACTIONS ON INFORMATION THEORY

Gene Network Inference via Structural Equation Modeling in Genetical Genomics Experiments

(2008) B. Liu et al.   GENETICS

DASSO: connections between the Dantzig selector and lasso

(2008) Gareth M. James et al.   JOURNAL OF THE ROYAL STATISTICAL SOCIETY SERIES B-STATISTICAL METHODOLOGY

Survival of the sparsest: robust gene networks are parsimonious

(2008) Robert D Leclerc   Molecular Systems Biology

Evolution of a Core Gene Network for Skeletogenesis in Chordates

(2008) Jochen Hecht et al.   PLoS Genetics

GENE REGULATORY NETWORK RECONSTRUCTION BY BAYESIAN INTEGRATION OF PRIOR KNOWLEDGE AND/OR DIFFERENT EXPERIMENTAL CONDITIONS

(2008) ADRIANO V. WERHLI et al.   Journal of Bioinformatics and Computational Biology