HMMSplicer: A Tool for Efficient and Sensitive Discovery of Known and Novel Splice Junctions in RNA-Seq Data
出版年份 2010 全文链接
标题
HMMSplicer: A Tool for Efficient and Sensitive Discovery of Known and Novel Splice Junctions in RNA-Seq Data
作者
关键词
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出版物
PLoS One
Volume 5, Issue 11, Pages e13875
出版商
Public Library of Science (PLoS)
发表日期
2010-11-09
DOI
10.1371/journal.pone.0013875
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Supersplat--spliced RNA-seq alignment
- (2010) D. W. Bryant et al. BIOINFORMATICS
- Expansion of the eukaryotic proteome by alternative splicing
- (2010) Timothy W. Nilsen et al. NATURE
- Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
- (2010) Cole Trapnell et al. NATURE BIOTECHNOLOGY
- Nova2 Regulates Neuronal Migration through an RNA Switch in Disabled-1 Signaling
- (2010) Masato Yano et al. NEURON
- Prediction of alternative isoforms from exon expression levels in RNA-Seq experiments
- (2010) Hugues Richard et al. NUCLEIC ACIDS RESEARCH
- Global and unbiased detection of splice junctions from RNA-seq data
- (2010) Adam Ameur et al. GENOME BIOLOGY
- TopHat: discovering splice junctions with RNA-Seq
- (2009) Cole Trapnell et al. BIOINFORMATICS
- SOAP2: an improved ultrafast tool for short read alignment
- (2009) R. Li et al. BIOINFORMATICS
- Fast and accurate short read alignment with Burrows-Wheeler transform
- (2009) H. Li et al. BIOINFORMATICS
- The Spliceosome: Design Principles of a Dynamic RNP Machine
- (2009) Markus C. Wahl et al. CELL
- Genome-wide analysis of allelic expression imbalance in human primary cells by high-throughput transcriptome resequencing
- (2009) Graham A. Heap et al. HUMAN MOLECULAR GENETICS
- An Abundance of Ubiquitously Expressed Genes Revealed by Tissue Transcriptome Sequence Data
- (2009) Daniel Ramsköld et al. PLoS Computational Biology
- The SR protein family
- (2009) Peter J Shepard et al. GENOME BIOLOGY
- Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
- (2009) Ben Langmead et al. GENOME BIOLOGY
- Optimal spliced alignments of short sequence reads
- (2008) F. De Bona et al. BIOINFORMATICS
- Highly Integrated Single-Base Resolution Maps of the Epigenome in Arabidopsis
- (2008) Ryan Lister et al. CELL
- Mapping short DNA sequencing reads and calling variants using mapping quality scores
- (2008) H. Li et al. GENOME RESEARCH
- Alternative isoform regulation in human tissue transcriptomes
- (2008) Eric T. Wang et al. NATURE
- Dynamic repertoire of a eukaryotic transcriptome surveyed at single-nucleotide resolution
- (2008) Brian T. Wilhelm et al. NATURE
- Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing
- (2008) Qun Pan et al. NATURE GENETICS
- Mapping and quantifying mammalian transcriptomes by RNA-Seq
- (2008) Ali Mortazavi et al. NATURE METHODS
- RNA-Seq: a revolutionary tool for transcriptomics
- (2008) Zhong Wang et al. NATURE REVIEWS GENETICS
- Substantial biases in ultra-short read data sets from high-throughput DNA sequencing
- (2008) J. C. Dohm et al. NUCLEIC ACIDS RESEARCH
- The Long March: A Sample Preparation Technique that Enhances Contig Length and Coverage by High-Throughput Short-Read Sequencing
- (2008) Katherine Sorber et al. PLoS One
- The Transcriptional Landscape of the Yeast Genome Defined by RNA Sequencing
- (2008) U. Nagalakshmi et al. SCIENCE
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