Protein Networks Reveal Detection Bias and Species Consistency When Analysed by Information-Theoretic Methods

Mining gene functional networks to improve mass-spectrometry-based protein identification

(2009) Smriti R. Ramakrishnan et al.   BIOINFORMATICS

Identifying the topology of protein complexes from affinity purification assays

(2009) Caroline C. Friedel et al.   BIOINFORMATICS

A unifying view of 21st century systems biology

(2009) Marc Vidal   FEBS LETTERS

Advances in systems biology are enhancing our understanding of disease and moving us closer to novel disease treatments

(2009) Eric E. Schadt et al.   GENETICA

Bootstrapping the Interactome: Unsupervised Identification of Protein Complexes in Yeast

(2009) Caroline C. Friedel et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Tailored graph ensembles as proxies or null models for real networks I: tools for quantifying structure

(2009) A Annibale et al.   Journal of Physics A-Mathematical and Theoretical

Constrained Markovian Dynamics of Random Graphs

(2009) A. C. C. Coolen et al.   JOURNAL OF STATISTICAL PHYSICS

Molecular networks as sensors and drivers of common human diseases

(2009) Eric E. Schadt   NATURE

Influence of Protein Abundance on High-Throughput Protein-Protein Interaction Detection

(2009) Joseph Ivanic et al.   PLoS One

Scale-Free Networks: A Decade and Beyond

(2009) Albert-László Barabási   SCIENCE

A Novel Scoring Approach for Protein Co-Purification Data Reveals High Interaction Specificity

(2009) Xueping Yu et al.   PLoS Computational Biology

Human Cancer Protein-Protein Interaction Network: A Structural Perspective

(2009) Gozde Kar et al.   PLoS Computational Biology

A Large Scale Analysis of Protein-Protein Interactions in the Nitrogen-fixing Bacterium Mesorhizobium loti

(2008) Y. Shimoda et al.   DNA RESEARCH

Spin models on random graphs with controlled topologies beyond degree constraints

(2008) C J Pérez Vicente et al.   Journal of Physics A-Mathematical and Theoretical

Challenges and Rewards of Interaction Proteomics

(2008) Shoshana J. Wodak et al.   MOLECULAR & CELLULAR PROTEOMICS

Empirically controlled mapping of the Caenorhabditis elegans protein-protein interactome network

(2008) Nicolas Simonis et al.   NATURE METHODS

An empirical framework for binary interactome mapping

(2008) Kavitha Venkatesan et al.   NATURE METHODS

An experimentally derived confidence score for binary protein-protein interactions

(2008) Pascal Braun et al.   NATURE METHODS

Human Protein Reference Database--2009 update

(2008) T. S. Keshava Prasad et al.   NUCLEIC ACIDS RESEARCH

Scaling of Degree Correlations and Its Influence on Diffusion in Scale-Free Networks

(2008) Lazaros K. Gallos et al.   PHYSICAL REVIEW LETTERS

The Binary Protein Interactome of Treponema pallidum – The Syphilis Spirochete

(2008) Björn Titz et al.   PLoS One

Estimating the size of the human interactome

(2008) M. P. H. Stumpf et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

High-Quality Binary Protein Interaction Map of the Yeast Interactome Network

(2008) H. Yu et al.   SCIENCE

An in Vivo Map of the Yeast Protein Interactome

(2008) K. Tarassov et al.   SCIENCE

Probing the Extent of Randomness in Protein Interaction Networks

(2008) Joseph Ivanic et al.   PLoS Computational Biology