4.6 Article

Quantitative Histological Validation of Diffusion MRI Fiber Orientation Distributions in the Rat Brain

期刊

PLOS ONE
卷 5, 期 1, 页码 -

出版社

PUBLIC LIBRARY SCIENCE
DOI: 10.1371/journal.pone.0008595

关键词

-

资金

  1. Research Council of Norway
  2. NIH [R01-EB00790, U24-RR021382]
  3. Martinos Center for Biomedical imaging
  4. American Heart Association

向作者/读者索取更多资源

Diffusion MRI (dMRI) is widely used to measure microstructural features of brain white matter, but commonly used dMRI measures have limited capacity to resolve the orientation structure of complex fiber architectures. While several promising new approaches have been proposed, direct quantitative validation of these methods against relevant histological architectures remains missing. In this study, we quantitatively compare neuronal fiber orientation distributions (FODs) derived from ex vivo dMRI data against histological measurements of rat brain myeloarchitecture using manual recordings of individual myelin stained fiber orientations. We show that accurate FOD estimates can be obtained from dMRI data, even in regions with complex architectures of crossing fibers with an intrinsic orientation error of approximately 5-6 degrees in these regions. The reported findings have implications for both clinical and research studies based on dMRI FOD measures, and provide an important biological benchmark for improved FOD reconstruction and fiber tracking methods.

作者

我是这篇论文的作者
点击您的名字以认领此论文并将其添加到您的个人资料中。

评论

主要评分

4.6
评分不足

次要评分

新颖性
-
重要性
-
科学严谨性
-
评价这篇论文

推荐

Article Computer Science, Interdisciplinary Applications

A Standards Organization for Open and FAIR Neuroscience: the International Neuroinformatics Coordinating Facility

Mathew Birdsall Abrams, Jan G. Bjaalie, Samir Das, Gary F. Egan, Satrajit S. Ghosh, Wojtek J. Goscinski, Jeffrey S. Grethe, Jeanette Hellgren Kotaleski, Eric Tatt Wei Ho, David N. Kennedy, Linda J. Lanyon, Trygve B. Leergaard, Helen S. Mayberg, Luciano Milanesi, Roman Moucek, J. B. Poline, Prasun K. Roy, Stephen C. Strother, Tong Boon Tang, Paul Tiesinga, Thomas Wachtler, Daniel K. Wojcik, Maryann E. Martone

Summary: There is a great need for coordination around standards and best practices in neuroscience to address challenges in data science. Developing community standards and gaining their adoption is difficult, as the current landscape is characterized by a lack of robust, validated standards and a plethora of underdeveloped and underutilized standards and best practices. An independent organization, the International Neuroinformatics Coordinating Facility (INCF), is dedicated to promoting data sharing in neuroscience and has implemented procedures for evaluating and endorsing community standards and best practices.

NEUROINFORMATICS (2022)

Correction Computer Science, Interdisciplinary Applications

A Standards Organization for Open and FAIR Neuroscience: the International Neuroinformatics Coordinating Facility (Jan, 10.1007/s12021-020-09509-0, 2021)

Mathew Birdsall Abrams, Jan G. Bjaalie, Samir Das, Gary F. Egan, Satrajit S. Ghosh, Wojtek J. Goscinski, Jeffrey S. Grethe, Jeanette Hellgren Kotaleski, Eric Tatt Wei Ho, David N. Kennedy, Linda J. Lanyon, Trygve B. Leergaard, Helen S. Mayberg, Luciano Milanesi, Roman Moucek, J. B. Poline, Prasun K. Roy, Stephen C. Strother, Tong Boon Tang, Paul Tiesinga, Thomas Wachtler, Daniel K. Wojcik, Maryann E. Martone

NEUROINFORMATICS (2022)

Review Neurosciences

International data governance for neuroscience

Damian O. Eke, Amy Bernard, Jan G. Bjaalie, Ricardo Chavarriaga, Takashi Hanakawa, Anthony J. Hannan, Sean L. Hill, Maryann E. Martone, Agnes McMahon, Oliver Ruebel, Sharon Crook, Edda Thiels, Franco Pestilli

Summary: With the increase in neuroscience projects on an international scale, there is a need to consider different ethical principles, laws, regulations, and policies for data sharing. This article proposes principles and operational considerations for navigating data governance in neuroscience at an international level and highlights the gaps, challenges, and opportunities in the global brain data ecosystem.

NEURON (2022)

Article Developmental Biology

The topography of corticopontine projections is controlled by postmitotic expression of the area-mapping gene Nr2f1

Chiara Tocco, Martin Ovsthus, Jan G. Bjaalie, Trygve B. Leergaard, Michele Studer

Summary: This study reveals that the expression of Nr2f1 gene in the cortical region directly affects the topographic mapping from the cortex to the pontine nuclei. Using transgenic mice and various techniques, the researchers identified that Nr2f1 expression in postmitotic neurons is crucial for controlling somatosensory topographic projections, while its expression in progenitor cells influences the ratio of different fiber types.

DEVELOPMENT (2022)

Article Multidisciplinary Sciences

Recommendations for repositories and scientific gateways from a neuroscience perspective

Malin Sandstrom, Mathew Abrams, Jan G. Bjaalie, Mona Hicks, David N. Kennedy, Arvind Kumar, Jean-Baptiste Poline, Prasun K. Roy, Paul Tiesinga, Thomas Wachtler, Wojtek J. Goscinski

Summary: Repositories and science gateways are vital resources for the neuroscience community, but users struggle to find the most suitable services. INCF has developed recommendations and criteria for selecting, establishing, and running repositories or scientific gateways with a FAIR perspective.

SCIENTIFIC DATA (2022)

Article Substance Abuse

Longitudinal determinants of insomnia among patients with alcohol use disorder

Ingeborg Bolstad, Helge Toft, Lars Lien, Jenny Skumsnes Moe, Benjamin Rolland, Jorgen G. Bramness

Summary: Insomnia is common among patients with AUD and can have negative impacts on their quality of life and cognitive functioning. This study aimed to examine the prevalence and development of self-perceived insomnia among inpatients in treatment for AUD, and identified factors such as sex, depression, and physical activity associated with insomnia.

ALCOHOL (2023)

Article Substance Abuse

Inflammatory cytokines in alcohol use disorder patients are lower in smokers and users of smokeless tobacco

Ingeborg Bolstad, Lars Lien, Jenny Skumsnes Moe, Sumita Pandey, Helge Toft, Jorgen G. Bramness

Summary: This study compared the level of circulating cytokines in different groups of patients with alcohol use disorder, including non-tobacco users, smokers, users of Swedish snus, and dual tobacco users. The findings suggest that nicotine has anti-inflammatory effects in patients with alcohol use disorder, but its other adverse effects limit its potential as a therapeutic option.

ALCOHOL-CLINICAL AND EXPERIMENTAL RESEARCH (2023)

Article Multidisciplinary Sciences

A Timm-Nissl multiplane microscopic atlas of rat brain zincergic terminal fields and metal-containing glia

Camilla H. Blixhavn, Finn-Mogens S. Haug, Heidi Kleven, Maja A. Puchades, Jan G. Bjaalie, Trygve B. Leergaard

Summary: The Timm's sulphide silver method can be used as a neuromorphological marker to stain zincergic terminal fields. In addition to visualizing zincergic terminal fields, the method also labels transition metals in neuronal perikarya and glial cells. We have established a comprehensive repository of microscopic images of rat brain sections stained with Timm's method to provide a benchmark reference for experimental investigations of zinc-related phenomena.

SCIENTIFIC DATA (2023)

Article Biochemical Research Methods

Waxholm Space atlas of the rat brain: a 3D atlas supporting data analysis and integration

Heidi Kleven, Ingvild E. Bjerke, Francisco Clasca, Henk J. Groenewegen, Jan G. Bjaalie, Trygve B. Leergaard

Summary: This paper presents an updated rat brain atlas, which provides annotations of 222 structures and detailed maps of various brain regions, supporting the interpretation and analysis of experimental rat brain data.

NATURE METHODS (2023)

Article Multidisciplinary Sciences

DeepSlice: rapid fully automatic registration of mouse brain imaging to a volumetric atlas

Harry Carey, Michael Pegios, Lewis Martin, Chris Saleeba, Anita J. Turner, Nicholas A. Everett, Ingvild E. Bjerke, Maja A. Puchades, Jan G. Bjaalie, Simon Mcmullan

Summary: Registration of data to a common frame of reference is crucial in analyzing and integrating diverse neuroscientific data. The traditional methods for registration are time-consuming and rely on expertise. However, using the neural network DeepSlice, we were able to significantly improve the speed while maintaining the accuracy of registering mouse brain histological images to the Allen Brain Common Coordinate Framework.

NATURE COMMUNICATIONS (2023)

Article Multidisciplinary Sciences

AtOM, an ontology model to standardize use of brain atlases in tools, workflows, and data infrastructures

Heidi Kleven, Thomas H. Gillespie, Lyuba Zehl, Timo Dickscheid, Jan G. Bjaalie, Maryann E. Martone, Trygve B. Leergaard

Summary: Brain atlases are crucial for accurate anatomical description of neuroscience data, but the lack of standardized description hinders their use in analytic tools and data registration. To address this issue, we developed an Atlas Ontology Model (AtOM) that provides a standardized framework for communication and use of brain atlases. By applying AtOM to different species' brain atlases, we demonstrate its potential in facilitating data integration and complying with FAIR guiding principles.

SCIENTIFIC DATA (2023)

暂无数据