Identification of microRNAs and their targets in tomato infected with Cucumber mosaic virus based on deep sequencing

Identification of miRNAs and their targets using high-throughput sequencing and degradome analysis in cytoplasmic male-sterile and its maintainer fertile lines of brassica juncea

(2013) Jinghua Yang et al.   BMC GENOMICS

Quantitative transcriptional changes associated with chlorosis severity in mosaic leaves of tobacco plants infected withCucumber mosaic virus

(2013) Tomofumi Mochizuki et al.   MOLECULAR PLANT PATHOLOGY

Plant Virus Ecology

(2013) Marilyn J. Roossinck   PLoS Pathogens

Identification of wild soybean miRNAs and their target genes responsive to aluminum stress

(2012) Qiao-Ying Zeng et al.   BMC PLANT BIOLOGY

Expression of the CMV-CP Gene inSynechocystis6803 Affects Cyanobacterial Photosynthesis

(2012) Chun-Mei Wang et al.   JOURNAL OF PHYTOPATHOLOGY

Altered Expression of MicroRNAs and Target mRNAs in Tomato Root and Stem Tissues upon Different Viral Infection

(2012) Junli Feng et al.   JOURNAL OF PHYTOPATHOLOGY

Alteration of tomato microRNAs expression during fruit development upon Cucumber mosaic virus and Tomato aspermy virus infection

(2012) Junli Feng et al.   MOLECULAR BIOLOGY REPORTS

Diverse correlation patterns between microRNAs and their targets during tomato fruit development indicates different modes of microRNA actions

(2012) Sara Lopez-Gomollon et al.   PLANTA

MicroRNA regulation of plant innate immune receptors

(2012) F. Li et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genome-wide identification of cold-responsive and new microRNAs in Populus tomentosa by high-throughput sequencing

(2011) Lei Chen et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Identification of drought-responsive microRNAs in Medicago truncatula by genome-wide high-throughput sequencing

(2011) Tianzuo Wang et al.   BMC GENOMICS

Characterization of the stress associated microRNAs in Glycine max by deep sequencing

(2011) Haiyan Li et al.   BMC PLANT BIOLOGY

The Art of MicroRNA Research

(2011) Eva van Rooij   CIRCULATION RESEARCH

Protein folding in the cell: an inside story

(2011) Arthur L Horwich   NATURE MEDICINE

Massive Analysis of Rice Small RNAs: Mechanistic Implications of Regulated MicroRNAs and Variants for Differential Target RNA Cleavage

(2011) D.-H. Jeong et al.   PLANT CELL

Profiling of short RNAs during fleshy fruit development reveals stage-specific sRNAome expression patterns

(2011) Irina Mohorianu et al.   PLANT JOURNAL

Identification of aluminum-responsive microRNAs in Medicago truncatula by genome-wide high-throughput sequencing

(2011) Lei Chen et al.   PLANTA

Viral Small Interfering RNAs Target Host Genes to Mediate Disease Symptoms in Plants

(2011) Neil A. Smith et al.   PLoS Pathogens

A Viral Satellite RNA Induces Yellow Symptoms on Tobacco by Targeting a Gene Involved in Chlorophyll Biosynthesis using the RNA Silencing Machinery

(2011) Hanako Shimura et al.   PLoS Pathogens

On reconciling the interactions between APETALA2, miR172 and AGAMOUS with the ABC model of flower development

(2010) H. Wollmann et al.   DEVELOPMENT

Identification, characterization and expression analysis of MicroRNAs and their targets in the potato (Solanum tuberosum)

(2010) Fuliang Xie et al.   GENE

Auxin response factor 2 (ARF2) plays a major role in regulating auxin-mediated leaf longevity

(2010) P. O. Lim et al.   JOURNAL OF EXPERIMENTAL BOTANY

Light Quantity and Photosystem Function Mediate Host Susceptibility toTurnip mosaic virusVia a Salicylic Acid–Independent Mechanism

(2010) A. Manfre et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Biotic stress globally downregulates photosynthesis genes

(2010) DAMLA D. BILGIN et al.   PLANT CELL AND ENVIRONMENT

Oscillating Gene Expression Determines Competence for Periodic Arabidopsis Root Branching

(2010) Miguel A. Moreno-Risueno et al.   SCIENCE

A Collection of Target Mimics for Comprehensive Analysis of MicroRNA Function in Arabidopsis thaliana

(2010) Marco Todesco et al.   PLoS Genetics

The Sequential Action of miR156 and miR172 Regulates Developmental Timing in Arabidopsis

(2009) Gang Wu et al.   CELL

Construction of Parallel Analysis of RNA Ends (PARE) libraries for the study of cleaved miRNA targets and the RNA degradome

(2009) Marcelo A German et al.   Nature Protocols

Genome-Wide Medicago truncatula Small RNA Analysis Revealed Novel MicroRNAs and Isoforms Differentially Regulated in Roots and Nodules

(2009) C. Lelandais-Briere et al.   PLANT CELL

Sliced microRNA targets and precise loop-first processing of MIR319 hairpins revealed by analysis of the Physcomitrella patens degradome

(2009) C. Addo-Quaye et al.   RNA

Control of Leaf and Vein Development by Auxin

(2009) E. Scarpella et al.   Cold Spring Harbor Perspectives in Biology

CleaveLand: a pipeline for using degradome data to find cleaved small RNA targets

(2008) C. Addo-Quaye et al.   BIOINFORMATICS

Endogenous siRNA and miRNA Targets Identified by Sequencing of the Arabidopsis Degradome

(2008) Charles Addo-Quaye et al.   CURRENT BIOLOGY

Identification of conserved microRNAs and their targets from Solanum lycopersicum Mill

(2008) Jianguang Zhang et al.   GENE

Identification of conserved microRNAs and their target genes in tomato (Lycopersicon esculentum)

(2008) Zujun Yin et al.   GENE

Deep sequencing of tomato short RNAs identifies microRNAs targeting genes involved in fruit ripening

(2008) S. Moxon et al.   GENOME RESEARCH

Virus infection improves drought tolerance

(2008) Ping Xu et al.   NEW PHYTOLOGIST

High-throughput stem-loop RT-qPCR miRNA expression profiling using minute amounts of input RNA

(2008) Pieter Mestdagh et al.   NUCLEIC ACIDS RESEARCH

Criteria for Annotation of Plant MicroRNAs

(2008) B. C. Meyers et al.   PLANT CELL

Widespread Translational Inhibition by Plant miRNAs and siRNAs

(2008) P. Brodersen et al.   SCIENCE

Evolution of plant microRNAs and their targets

(2008) Michael J. Axtell et al.   TRENDS IN PLANT SCIENCE