Identification of Conserved and Novel Cold-Responsive MicroRNAs in Trifoliate Orange (Poncirus trifoliata (L.) Raf.) Using High-Throughput Sequencing

Genome-wide identification of alternate bearing-associated microRNAs (miRNAs) in olive (Olea europaea L.)

(2013) Huriye Yanik et al.   BMC PLANT BIOLOGY

Heat stress induction ofmiR398triggers a regulatory loop that is critical for thermotolerance in Arabidopsis

(2013) Qingmei Guan et al.   PLANT JOURNAL

Constitutive Expression of a miR319 Gene Alters Plant Development and Enhances Salt and Drought Tolerance in Transgenic Creeping Bentgrass

(2013) M. Zhou et al.   PLANT PHYSIOLOGY

Role of recently evolved miRNA regulation of sunflowerHaWRKY6in response to temperature damage

(2012) Jorge I. Giacomelli et al.   NEW PHYTOLOGIST

Uncovering Small RNA-Mediated Responses to Cold Stress in a Wheat Thermosensitive Genic Male-Sterile Line by Deep Sequencing

(2012) Z. Tang et al.   PLANT PHYSIOLOGY

Identification of Soybean MicroRNAs Involved in Soybean Cyst Nematode Infection by Deep Sequencing

(2012) Xiaoyan Li et al.   PLoS One

Identification and Comparative Profiling of miRNAs in an Early Flowering Mutant of Trifoliate Orange and Its Wild Type by Genome-Wide Deep Sequencing

(2012) Lei-Ming Sun et al.   PLoS One

Genome-wide identification of cold-responsive and new microRNAs in Populus tomentosa by high-throughput sequencing

(2011) Lei Chen et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Role of miRNAs and siRNAs in biotic and abiotic stress responses of plants

(2011) Basel Khraiwesh et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

Identification of miRNAs and their target genes in developing soybean seeds by deep sequencing

(2011) Qing-Xin Song et al.   BMC PLANT BIOLOGY

Identification and comparative analysis of drought-associated microRNAs in two cowpea genotypes

(2011) Blanca E Barrera-Figueroa et al.   BMC PLANT BIOLOGY

Identification of novel maize miRNAs by measuring the precision of precursor processing

(2011) Yinping Jiao et al.   BMC PLANT BIOLOGY

Identification and characterization of low temperature stress responsive genes in Poncirus trifoliata by suppression subtractive hybridization

(2011) T. Peng et al.   GENE

Genome-wide characterization of new and drought stress responsive microRNAs in Populus euphratica

(2011) Bosheng Li et al.   JOURNAL OF EXPERIMENTAL BOTANY

Identification of conserved and novel microRNAs that are responsive to heat stress in Brassica rapa

(2011) Xiang Yu et al.   JOURNAL OF EXPERIMENTAL BOTANY

Selection of reference genes for quantitative real-time RT-PCR analysis in citrus

(2011) Jiawen Yan et al.   MOLECULAR BIOLOGY REPORTS

Identification of miRNAs and Their Target Genes Using Deep Sequencing and Degradome Analysis in Trifoliate Orange [Poncirus trifoliate (L.) Raf]

(2011) Jin-Zhi Zhang et al.   MOLECULAR BIOTECHNOLOGY

Involvement of miR169 in the nitrogen-starvation responses in Arabidopsis

(2011) Meng Zhao et al.   NEW PHYTOLOGIST

Genome-wide identification of Medicago truncatula microRNAs and their targets reveals their differential regulation by heavy metal

(2011) ZHAO SHENG ZHOU et al.   PLANT CELL AND ENVIRONMENT

The Role of MicroRNAs in Phosphorus Deficiency Signaling

(2011) H.-F. Kuo et al.   PLANT PHYSIOLOGY

MiRNA Control of Vegetative Phase Change in Trees

(2011) Jia-Wei Wang et al.   PLoS Genetics

Deep sequencing discovery of novel and conserved microRNAs in trifoliate orange (Citrus trifoliata)

(2010) Changnian Song et al.   BMC GENOMICS

Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type

(2010) Qiang Xu et al.   BMC GENOMICS

MIQE précis: Practical implementation of minimum standard guidelines for fluorescence-based quantitative real-time PCR experiments

(2010) Stephen A Bustin et al.   BMC MOLECULAR BIOLOGY

Functional characterization of plant small RNAs based on next-generation sequencing data

(2010) Ming Chen et al.   COMPUTATIONAL BIOLOGY AND CHEMISTRY

miR396-targeted AtGRF transcription factors are required for coordination of cell division and differentiation during leaf development in Arabidopsis

(2010) Li Wang et al.   JOURNAL OF EXPERIMENTAL BOTANY

Genome-wide identification and analysis of drought-responsive microRNAs in Oryza sativa

(2010) Liguo Zhou et al.   JOURNAL OF EXPERIMENTAL BOTANY

miRBase: integrating microRNA annotation and deep-sequencing data

(2010) A. Kozomara et al.   NUCLEIC ACIDS RESEARCH

Temporal Control of Trichome Distribution by MicroRNA156-Targeted SPL Genes in Arabidopsis thaliana

(2010) N. Yu et al.   PLANT CELL

The MicroRNA159-Regulated GAMYB-like Genes Inhibit Growth and Promote Programmed Cell Death in Arabidopsis

(2010) M. M. Alonso-Peral et al.   PLANT PHYSIOLOGY

Overexpression of microRNA395c or 395e affects differently the seed germination of Arabidopsis thaliana under stress conditions

(2010) Joo Yeol Kim et al.   PLANTA

Over-expression of osa-MIR396c decreases salt and alkali stress tolerance

(2010) Peng Gao et al.   PLANTA

The role of microRNAs in copper and cadmium homeostasis

(2009) Yan-Fei Ding et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Deep sequencing of Brachypodium small RNAs at the global genome level identifies microRNAs involved in cold stress response

(2009) Jingyu Zhang et al.   BMC GENOMICS

Members of miR-169 family are induced by high salinity and transiently inhibit the NF-YA transcription factor

(2009) Botao Zhao et al.   BMC MOLECULAR BIOLOGY

Novel microRNAs uncovered by deep sequencing of small RNA transcriptomes in bread wheat (Triticum aestivum L.) and Brachypodium distachyon (L.) Beauv

(2009) Bo Wei et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

Arabidopsis MiR396 Mediates the Development of Leaves and Flowers in Transgenic Tobacco

(2009) Fengxi Yang et al.   JOURNAL OF PLANT BIOLOGY

RDML: structured language and reporting guidelines for real-time quantitative PCR data

(2009) S. Lefever et al.   NUCLEIC ACIDS RESEARCH

The role of microRNAs and other endogenous small RNAs in plant stress responses

(2008) L SHUKLA et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

High-throughput sequencing of Medicago truncatula short RNAs identifies eight new miRNA families

(2008) Gyorgy Szittya et al.   BMC GENOMICS

In silico identification of conserved microRNAs in large number of diverse plant species

(2008) Ramanjulu Sunkar et al.   BMC PLANT BIOLOGY

Identification of novel and candidate miRNAs in rice by high throughput sequencing

(2008) Ramanjulu Sunkar et al.   BMC PLANT BIOLOGY

Endogenous siRNA and miRNA Targets Identified by Sequencing of the Arabidopsis Degradome

(2008) Charles Addo-Quaye et al.   CURRENT BIOLOGY

Comparative analysis of the small RNA transcriptomes of Pinus contorta and Oryza sativa

(2008) R. D. Morin et al.   GENOME RESEARCH

Characterization and expression profiles of miRNAs in rice seeds

(2008) Liang-Jiao Xue et al.   NUCLEIC ACIDS RESEARCH

The Arabidopsis NFYA5 Transcription Factor Is Regulated Transcriptionally and Posttranscriptionally to Promote Drought Resistance

(2008) W.-X. Li et al.   PLANT CELL

Criteria for Annotation of Plant MicroRNAs

(2008) B. C. Meyers et al.   PLANT CELL

Gene silencing in plants using artificial microRNAs and other small RNAs

(2008) Stephan Ossowski et al.   PLANT JOURNAL

Characterization of transcription factor gene SNAC2 conferring cold and salt tolerance in rice

(2008) Honghong Hu et al.   PLANT MOLECULAR BIOLOGY

Microarray-based analysis of stress-regulated microRNAs in Arabidopsis thaliana

(2008) H.-H. Liu et al.   RNA