The iRoCS Toolbox - 3D analysis of the plant root apical meristem at cellular resolution

Smaller, Faster, Brighter: Advances in Optical Imaging of Living Plant Cells

(2013) Sidney L. Shaw et al.   Annual Review of Plant Biology

ViBE-Z: a framework for 3D virtual colocalization analysis in zebrafish larval brains

(2012) Olaf Ronneberger et al.   NATURE METHODS

Integrated genetic and computation methods for in planta cytometry

(2012) Fernán Federici et al.   NATURE METHODS

Positional Information by Differential Endocytosis Splits Auxin Response to Drive Arabidopsis Root Meristem Growth

(2011) Luca Santuari et al.   CURRENT BIOLOGY

Fast Rotation Invariant 3D Feature Computation Utilizing Efficient Local Neighborhood Operators

(2011) H. Skibbe et al.   IEEE TRANSACTIONS ON PATTERN ANALYSIS AND MACHINE INTELLIGENCE

Quantitation of Cellular Dynamics in Growing Arabidopsis Roots with Light Sheet Microscopy

(2011) Giovanni Sena et al.   PLoS One

High-contrast three-dimensional imaging of the Arabidopsis leaf enables the analysis of cell dimensions in the epidermis and mesophyll

(2010) Nathalie Wuyts et al.   Plant Methods

Gibberellin Signaling in the Endodermis Controls Arabidopsis Root Meristem Size

(2009) Susana Ubeda-Tomás et al.   CURRENT BIOLOGY

XuvTools: free, fast and reliable stitching of large 3D datasets

(2009) M. EMMENLAUER et al.   JOURNAL OF MICROSCOPY

A 3D digital atlas of C. elegans and its application to single-cell analyses

(2009) Fuhui Long et al.   NATURE METHODS

A Quantitative Spatiotemporal Atlas of Gene Expression in the Drosophila Blastoderm

(2008) Charless C. Fowlkes et al.   CELL

High resolution three-dimensional brain atlas using an average magnetic resonance image of 40 adult C57Bl/6J mice

(2008) A.E. Dorr et al.   NEUROIMAGE

High-Resolution Whole-Mount Imaging of Three-Dimensional Tissue Organization and Gene Expression Enables the Study of Phloem Development and Structure in Arabidopsis

(2008) E. Truernit et al.   PLANT CELL