The roots of plant defenses: integrative multivariate analyses uncover dynamic behaviors of gene and metabolic networks of roots elicited by leaf herbivory

Leaf-herbivore attack reduces carbon reserves and regrowth from the roots via jasmonate and auxin signaling

(2013) Ricardo A. R. Machado et al.   NEW PHYTOLOGIST

Deciphering Herbivory-Induced Gene-to-Metabolite Dynamics in Nicotiana attenuata Tissues Using a Multifactorial Approach

(2013) J. Gulati et al.   PLANT PHYSIOLOGY

Lipoxygenase6-Dependent Oxylipin Synthesis in Roots Is Required for Abiotic and Biotic Stress Resistance of Arabidopsis

(2013) W. Grebner et al.   PLANT PHYSIOLOGY

Identification and characterization of circadian clock genes in a native tobacco, Nicotiana attenuata

(2012) Felipe Yon et al.   BMC PLANT BIOLOGY

A Systems Biology View of Responses to Lignin Biosynthesis Perturbations in Arabidopsis

(2012) R. Vanholme et al.   PLANT CELL

Metabolomics reveals herbivore-induced metabolites of resistance and susceptibility in maize leaves and roots

(2012) GUILLAUME MARTI et al.   PLANT CELL AND ENVIRONMENT

Physiological significance of the plant circadian clock in natural field conditions

(2012) TAKESHI IZAWA   PLANT CELL AND ENVIRONMENT

“Guilt by Association” Is the Exception Rather Than the Rule in Gene Networks

(2012) Jesse Gillis et al.   PLoS Computational Biology

Timing of plant immune responses by a central circadian regulator

(2011) Wei Wang et al.   NATURE

Tissue Specific Diurnal Rhythms of Metabolites and Their Regulation during Herbivore Attack in a Native Tobacco, Nicotiana attenuata

(2011) Sang-Gyu Kim et al.   PLoS One

Genome-wide network model capturing seed germination reveals coordinated regulation of plant cellular phase transitions

(2011) G. W. Bassel et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genetic dissection of the biotic stress response using a genome-scale gene network for rice

(2011) I. Lee et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A bootstrap-based non-parametric ANOVA method with applications to factorial microarray data

(2011) Baiyu Zhou et al.   STATISTICA SINICA

Circadian Control of Global Gene Expression Patterns

(2010) Colleen J. Doherty et al.   Annual Review of Genetics

Development and Validation of a Liquid Chromatography−Electrospray Ionization−Time-of-Flight Mass Spectrometry Method for Induced Changes inNicotiana attenuataLeaves during Simulated Herbivory

(2010) Emmanuel Gaquerel et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Rational association of genes with traits using a genome-scale gene network for Arabidopsis thaliana

(2010) Insuk Lee et al.   NATURE BIOTECHNOLOGY

R2R3-NaMYB8 Regulates the Accumulation of Phenylpropanoid-Polyamine Conjugates, Which Are Essential for Local and Systemic Defense against Insect Herbivores in Nicotiana attenuata

(2010) H. Kaur et al.   PLANT PHYSIOLOGY

Interaction with Diurnal and Circadian Regulation Results in Dynamic Metabolic and Transcriptional Changes during Cold Acclimation in Arabidopsis

(2010) Carmen Espinoza et al.   PLoS One

Oscillating Gene Expression Determines Competence for Periodic Arabidopsis Root Branching

(2010) Miguel A. Moreno-Risueno et al.   SCIENCE

Pyrrolizidine alkaloid biosynthesis, evolution of a pathway in plant secondary metabolism

(2009) Dietrich Ober et al.   PHYTOCHEMISTRY

Regulation and function of root exudates

(2009) DAYAKAR V. BADRI et al.   PLANT CELL AND ENVIRONMENT

Co-expression tools for plant biology: opportunities for hypothesis generation and caveats

(2009) BJ��RN USADEL et al.   PLANT CELL AND ENVIRONMENT

Vacuolar transport of nicotine is mediated by a multidrug and toxic compound extrusion (MATE) transporter in Nicotiana tabacum

(2009) M. Morita et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The underestimated role of roots in defense against leaf attackers

(2009) Matthias Erb et al.   TRENDS IN PLANT SCIENCE

Alkaloid Biosynthesis: Metabolism and Trafficking

(2008) Jörg Ziegler et al.   Annual Review of Plant Biology

CONSTITUTIVE AND INDUCED DEFENSES TO HERBIVORY IN ABOVE- AND BELOWGROUND PLANT TISSUES

(2008) Ian Kaplan et al.   ECOLOGY

Why Does Herbivore Attack Reconfigure Primary Metabolism?

(2008) J. Schwachtje et al.   PLANT PHYSIOLOGY

Network Discovery Pipeline Elucidates Conserved Time-of-Day–Specific cis-Regulatory Modules

(2008) Todd P. Michael et al.   PLoS Genetics

Systems approach identifies an organic nitrogen-responsive gene network that is regulated by the master clock control gene CCA1

(2008) R. A. Gutierrez et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Circadian Clock inArabidopsisRoots Is a Simplified Slave Version of the Clock in Shoots

(2008) Allan B. James et al.   SCIENCE

Cell Identity Mediates the Response of Arabidopsis Roots to Abiotic Stress

(2008) J. R. Dinneny et al.   SCIENCE