Alternative mRNA processing increases the complexity of microRNA-based gene regulation in Arabidopsis

Global analysis of gene-level microRNA expression in Arabidopsis using deep sequencing data

(2011) Xiaozeng Yang et al.   GENOMICS

DNA Methylation Mediated by a MicroRNA Pathway

(2010) Liang Wu et al.   MOLECULAR CELL

miRBase: integrating microRNA annotation and deep-sequencing data

(2010) A. Kozomara et al.   NUCLEIC ACIDS RESEARCH

Genome-wide mapping of the HY5-mediated genenetworks in Arabidopsis that involve both transcriptional and post-transcriptional regulation

(2010) Huiyong Zhang et al.   PLANT JOURNAL

Identification of MicroRNAs Involved in Pathogen-Associated Molecular Pattern-Triggered Plant Innate Immunity

(2010) Y. Li et al.   PLANT PHYSIOLOGY

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

miR156-Regulated SPL Transcription Factors Define an Endogenous Flowering Pathway in Arabidopsis thaliana

(2009) Jia-Wei Wang et al.   CELL

The Sequential Action of miR156 and miR172 Regulates Developmental Timing in Arabidopsis

(2009) Gang Wu et al.   CELL

Origin, Biogenesis, and Activity of Plant MicroRNAs

(2009) Olivier Voinnet   CELL

MicroRNAs: Target Recognition and Regulatory Functions

(2009) David P. Bartel   CELL

Genome-wide mapping of alternative splicing in Arabidopsis thaliana

(2009) S. A. Filichkin et al.   GENOME RESEARCH

Comprehensive prediction of novel microRNA targets in Arabidopsis thaliana

(2009) Leonardo Alves-Junior et al.   NUCLEIC ACIDS RESEARCH

Exploring the transcriptional landscape of plant circadian rhythms using genome tiling arrays

(2009) Samuel P Hazen et al.   GENOME BIOLOGY

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Selection and mutation on microRNA target sequences during rice evolution

(2008) Xingyi Guo et al.   BMC GENOMICS

Cross-species EST alignments reveal novel and conserved alternative splicing events in legumes

(2008) Bing-Bing Wang et al.   BMC PLANT BIOLOGY

Genome-wide identification and evolutionary analysis of the plant specific SBP-box transcription factor family

(2008) An-Yuan Guo et al.   GENE

Global identification of microRNA–target RNA pairs by parallel analysis of RNA ends

(2008) Marcelo A German et al.   NATURE BIOTECHNOLOGY

Fluorescence correlation spectroscopy and fluorescence cross-correlation spectroscopy reveal the cytoplasmic origination of loaded nuclear RISC in vivo in human cells

(2008) Thomas Ohrt et al.   NUCLEIC ACIDS RESEARCH

Reconstituting plant miRNA biogenesis

(2008) J.-K. Zhu   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

AGO1-miR173 complex initiates phased siRNA formation in plants

(2008) T. A. Montgomery et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Widespread Translational Inhibition by Plant miRNAs and siRNAs

(2008) P. Brodersen et al.   SCIENCE

Splicing Factors Facilitate RNAi-Directed Silencing in Fission Yeast

(2008) E. H. Bayne et al.   SCIENCE

A miRacle in plant development: Role of microRNAs in cell differentiation and patterning

(2008) D GARCIA   SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY

Evolution of plant microRNAs and their targets

(2008) Michael J. Axtell et al.   TRENDS IN PLANT SCIENCE