General Theory of Genotype to Phenotype Mapping: Derivation of Epigenetic Landscapes from N-Node Complex Gene Regulatory Networks

Characterization of stem cells and cancer cells on the basis of gene expression profile stability, plasticity, and robustness

(2011) Kunihiko Kaneko   BIOESSAYS

Predicting Pancreas Cell Fate Decisions and Reprogramming with a Hierarchical Multi-Attractor Model

(2011) Joseph Xu Zhou et al.   PLoS One

Quantifying the Waddington landscape and biological paths for development and differentiation

(2011) J. Wang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Potential Landscape of Genetic Circuits Imposes the Arrow of Time in Stem Cell Differentiation

(2010) Jin Wang et al.   BIOPHYSICAL JOURNAL

Single-cell and coupled GRN models of cell patterning in the Arabidopsis thaliana root stem cell niche

(2010) Eugenio Azpeitia et al.   BMC Systems Biology

Flower Development as an Interplay between Dynamical Physical Fields and Genetic Networks

(2010) Rafael Ángel Barrio et al.   PLoS One

Relationship among phenotypic plasticity, phenotypic fluctuations, robustness, and evolvability; Waddington’s legacy revisited under the spirit of Einstein

(2009) Kunihiko Kaneko   JOURNAL OF BIOSCIENCES

Funnel Landscape and Mutational Robustness as a Result of Evolution under Thermal Noise

(2009) Ayaka Sakata et al.   PHYSICAL REVIEW LETTERS

Noise-Driven Stem Cell and Progenitor Population Dynamics

(2008) Martin Hoffmann et al.   PLoS One

Floral Morphogenesis: Stochastic Explorations of a Gene Network Epigenetic Landscape

(2008) Elena R. Álvarez-Buylla et al.   PLoS One