Modularity optimization by conformational space annealing

De novo protein structure prediction by dynamic fragment assembly and conformational space annealing

(2011) Juyong Lee et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Topological Cluster Analysis Reveals the Systemic Organization of the Caenorhabditis elegans Connectome

(2011) Yunkyu Sohn et al.   PLoS Computational Biology

Link communities reveal multiscale complexity in networks

(2010) Yong-Yeol Ahn et al.   NATURE

Column generation algorithms for exact modularity maximization in networks

(2010) Daniel Aloise et al.   PHYSICAL REVIEW E

Performance of modularity maximization in practical contexts

(2010) Benjamin H. Good et al.   PHYSICAL REVIEW E

Advanced modularity-specialized label propagation algorithm for detecting communities in networks

(2009) X. Liu et al.   PHYSICA A-STATISTICAL MECHANICS AND ITS APPLICATIONS

Community detection algorithms: A comparative analysis

(2009) Andrea Lancichinetti et al.   PHYSICAL REVIEW E

Community detection in graphs

(2009) Santo Fortunato   PHYSICS REPORTS-REVIEW SECTION OF PHYSICS LETTERS

Multiple Sequence Alignment by Conformational Space Annealing

(2008) Keehyoung Joo et al.   BIOPHYSICAL JOURNAL

Modularity-maximizing graph communities via mathematical programming

(2008) G. Agarwal et al.   EUROPEAN PHYSICAL JOURNAL B

On Modularity Clustering

(2008) U. Brandes et al.   IEEE TRANSACTIONS ON KNOWLEDGE AND DATA ENGINEERING

Fast unfolding of communities in large networks

(2008) Vincent D Blondel et al.   JOURNAL OF STATISTICAL MECHANICS-THEORY AND EXPERIMENT

Adaptive clustering algorithm for community detection in complex networks

(2008) Zhenqing Ye et al.   PHYSICAL REVIEW E

Efficient modularity optimization by multistep greedy algorithm and vertex mover refinement

(2008) Philipp Schuetz et al.   PHYSICAL REVIEW E

Maps of random walks on complex networks reveal community structure

(2008) M. Rosvall et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA