Transcriptional regulation by histone modifications: towards a theory of chromatin re-organization during stem cell differentiation

Is adult stem cell aging driven by conflicting modes of chromatin remodeling?

(2012) Jens Przybilla et al.   BIOESSAYS

Asymmetrically Modified Nucleosomes

(2012) Philipp Voigt et al.   CELL

A Novel Human Polycomb Binding Site Acts As a Functional Polycomb Response Element in Drosophila

(2012) Suresh Cuddapah et al.   PLoS One

Modeling the dynamic epigenome: from histone modifications towards self-organizing chromatin

(2012) Thimo Rohlf et al.   Epigenomics

Barriers and Silencers: A Theoretical Toolkit for Control and Containment of Nucleosome-Based Epigenetic States

(2011) Ian B. Dodd et al.   JOURNAL OF MOLECULAR BIOLOGY

Interactions among Polycomb Domains Are Guided by Chromosome Architecture

(2011) Bas Tolhuis et al.   PLoS Genetics

Poised Lineage Specification in Multipotential Hematopoietic Stem and Progenitor Cells by the Polycomb Protein Bmi1

(2010) Hideyuki Oguro et al.   Cell Stem Cell

Do chromatin loops provide epigenetic gene expression states?

(2010) Wulan Deng et al.   CURRENT OPINION IN GENETICS & DEVELOPMENT

Epigenetic Transitions in Germ Cell Development and Meiosis

(2010) Satya K. Kota et al.   DEVELOPMENTAL CELL

Gene expression density profiles characterize modes of genomic regulation: Theory and experiment

(2010) Hans Binder et al.   JOURNAL OF BIOTECHNOLOGY

Innovation in gene regulation: The case of chromatin computation

(2010) Sonja J. Prohaska et al.   JOURNAL OF THEORETICAL BIOLOGY

CpG islands influence chromatin structure via the CpG-binding protein Cfp1

(2010) John P. Thomson et al.   NATURE

Linking cell signaling and the epigenetic machinery

(2010) Helai P Mohammad et al.   NATURE BIOTECHNOLOGY

Chromatin structure and the inheritance of epigenetic information

(2010) Raphaël Margueron et al.   NATURE REVIEWS GENETICS

Histone H3 Lysine 27 Methylation Asymmetry on Developmentally-Regulated Promoters Distinguish the First Two Lineages in Mouse Preimplantation Embryos

(2010) John Arne Dahl et al.   PLoS One

Histone demethylases in development and disease

(2010) Marianne Terndrup Pedersen et al.   TRENDS IN CELL BIOLOGY

GC-Rich Sequence Elements Recruit PRC2 in Mammalian ES Cells

(2010) Eric M. Mendenhall et al.   PLoS Genetics

EMERGENT NETWORK STRUCTURE, EVOLVABLE ROBUSTNESS, AND NONLINEAR EFFECTS OF POINT MUTATIONS IN AN ARTIFICIAL GENOME MODEL

(2009) THIMO ROHLF et al.   ADVANCES IN COMPLEX SYSTEMS

The role of epigenetics in aging and age-related diseases

(2009) Vincenzo Calvanese et al.   AGEING RESEARCH REVIEWS

In VivoResidue-specific Histone Methylation Dynamics

(2009) Barry M. Zee et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

On the Mechanism of Multiple Lysine Methylation by the Human Mixed Lineage Leukemia Protein-1 (MLL1) Core Complex

(2009) Anamika Patel et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Inheritance of epigenetic chromatin silencing

(2009) Diana David-Rus et al.   JOURNAL OF THEORETICAL BIOLOGY

Epigenetic inheritance during the cell cycle

(2009) Aline V. Probst et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

In Brief

(2009)   NATURE REVIEWS NEUROSCIENCE

Genetics and epigenetics: stability and plasticity during cellular differentiation

(2009) Fabio Mohn et al.   TRENDS IN GENETICS

Functional Anatomy of Polycomb and Trithorax Chromatin Landscapes in Drosophila Embryos

(2009) Bernd Schuettengruber et al.   PLOS BIOLOGY

Fast Mapping of Short Sequences with Mismatches, Insertions and Deletions Using Index Structures

(2009) Steve Hoffmann et al.   PLoS Computational Biology

Product Specificity and Mechanism of Protein Lysine Methyltransferases: Insights from the Histone Lysine Methyltransferase SET8

(2008) Xiaodong Zhang et al.   BIOCHEMISTRY

Genome organization: Balancing stability and plasticity

(2008) Malte Wachsmuth et al.   BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR CELL RESEARCH

Boundaries. Boundaries…Boundaries???

(2008) Victoria V Lunyak   CURRENT OPINION IN CELL BIOLOGY

Stem cell regulation by polycomb repressors: postponing commitment

(2008) Alexandra M Pietersen et al.   CURRENT OPINION IN CELL BIOLOGY

Modelling and analysis of gene regulatory networks

(2008) Guy Karlebach et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Programming of gene expression by Polycomb group proteins

(2008) Claudia Köhler et al.   TRENDS IN CELL BIOLOGY

PcG Proteins, DNA Methylation, and Gene Repression by Chromatin Looping

(2008) Vijay K Tiwari et al.   PLOS BIOLOGY