Experimental signal dissection and method sensitivity analyses reaffirm the potential of fossils and morphology in the resolution of the relationship of angiosperms and Gnetales

Bayesian and likelihood phylogenetic reconstructions of morphological traits are not discordant when taking uncertainty into consideration: a comment on Puttick et   al .

(2017) Joseph W. Brown et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Parsimony and maximum-likelihood phylogenetic analyses of morphology do not generally integrate uncertainty in inferring evolutionary history: a response to Brown et al.

(2017) Mark N. Puttick et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Uncertain-tree: discriminating among competing approaches to the phylogenetic analysis of phenotype data

(2017) Mark N. Puttick et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

The fossil Osmundales (Royal Ferns)—a phylogenetic network analysis, revised taxonomy, and evolutionary classification of anatomically preserved trunks and rhizomes

(2017) Benjamin Bomfleur et al.   PeerJ

Phylogenetic diversification of Early Cretaceous seed plants: The compound seed cone of Doylea tetrahedrasperma

(2016) Gar W. Rothwell et al.   AMERICAN JOURNAL OF BOTANY

Estimating morphological diversity and tempo with discrete character-taxon matrices: implementation, challenges, progress, and future directions

(2016) Graeme T. Lloyd   BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

Bayesian methods outperform parsimony but at the expense of precision in the estimation of phylogeny from discrete morphological data

(2016) Joseph E. O'Reilly et al.   Biology Letters

The evolutionary relationships and age of Homo naledi: An assessment using dated Bayesian phylogenetic methods

(2016) Mana Dembo et al.   JOURNAL OF HUMAN EVOLUTION

Mammal madness: is the mammal tree of life not yet resolved?

(2016) Nicole M. Foley et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Morphological and molecular convergences in mammalian phylogenetics

(2016) Zhengting Zou et al.   Nature Communications

Morphological Phylogenetics in the Genomic Age

(2015) Michael S.Y. Lee et al.   CURRENT BIOLOGY

Total-Evidence Dating under the Fossilized Birth–Death Process

(2015) Chi Zhang et al.   SYSTEMATIC BIOLOGY

Post-molecular systematics and the future of phylogenetics

(2015) R. Alexander Pyron   TRENDS IN ECOLOGY & EVOLUTION

The phylogenetic affinities of the bizarre Late Cretaceous Romanian theropodBalaur bondoc(Dinosauria, Maniraptora): dromaeosaurid or flightless bird?

(2015) Andrea Cau et al.   PeerJ

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Habit and Ecology of the Petriellales, an Unusual Group of Seed Plants from the Triassic of Gondwana

(2014) Benjamin Bomfleur et al.   INTERNATIONAL JOURNAL OF PLANT SCIENCES

Integrating Early Cretaceous Fossils into the Phylogeny of Living Angiosperms: ANITA Lines and Relatives of Chloranthaceae

(2014) James A. Doyle et al.   INTERNATIONAL JOURNAL OF PLANT SCIENCES

Bayesian Analysis Using a Simple Likelihood Model Outperforms Parsimony for Estimation of Phylogeny from Discrete Morphological Data

(2014) April M. Wright et al.   PLoS One

Phylotranscriptomic analysis of the origin and early diversification of land plants

(2014) Norman J. Wickett et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Sustained miniaturization and anatomical innovation in the dinosaurian ancestors of birds

(2014) M. S. Y. Lee et al.   SCIENCE

Conflicting Phylogenies for Early Land Plants are Caused by Composition Biases among Synonymous Substitutions

(2014) Cymon J. Cox et al.   SYSTEMATIC BIOLOGY

Land plant evolutionary timeline: Gene effects are secondary to fossil constraints in relaxed clock estimation of age and substitution rates

(2013) Susana Magallón et al.   AMERICAN JOURNAL OF BOTANY

Evolution and Phylogeny of Gnetophytes: Evidence from the Anatomically Preserved Seed Cone Protoephedrites eamesii gen. et sp. nov. and the Seeds of Several Bennettitalean Species

(2013) Gar W. Rothwell et al.   INTERNATIONAL JOURNAL OF PLANT SCIENCES

A Jurassic avialan dinosaur from China resolves the early phylogenetic history of birds

(2013) Pascal Godefroit et al.   NATURE

The Placental Mammal Ancestor and the Post-K-Pg Radiation of Placentals

(2013) M. A. O'Leary et al.   SCIENCE

Arthropod fossil data increase congruence of morphological and molecular phylogenies

(2013) David A. Legg et al.   Nature Communications

Molecular and Fossil Evidence on the Origin of Angiosperms

(2012) James A. Doyle   Annual Review of Earth and Planetary Sciences

Assembling the Squamate Tree of Life: Perspectives from the Phenotype and the Fossil Record

(2012) Jacques A. Gauthier et al.   Bulletin of the Peabody Museum of Natural History

The evolution of reproductive structures in seed plants: a re-examination based on insights from developmental genetics

(2012) Sarah Mathews et al.   NEW PHYTOLOGIST

Highly Incomplete Taxa Can Rescue Phylogenetic Analyses from the Negative Impacts of Limited Taxon Sampling

(2012) John J. Wiens et al.   PLoS One

A Total-Evidence Approach to Dating with Fossils, Applied to the Early Radiation of the Hymenoptera

(2012) Fredrik Ronquist et al.   SYSTEMATIC BIOLOGY

Likelihood reinstates Archaeopteryx as a primitive bird

(2011) M. S. Y. Lee et al.   Biology Letters

Systematic Error in Seed Plant Phylogenomics

(2011) Bojian Zhong et al.   Genome Biology and Evolution

Divergence Time Estimation Using Fossils as Terminal Taxa and the Origins of Lissamphibia

(2011) R. Alexander Pyron   SYSTEMATIC BIOLOGY

Ecdysozoan Mitogenomics: Evidence for a Common Origin of the Legged Invertebrates, the Panarthropoda

(2010) Omar Rota-Stabelli et al.   Genome Biology and Evolution

Defining the limits of flowers: the challenge of distinguishing between the evolutionary products of simple versus compound strobili

(2010) P. J. Rudall et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

A duplicate gene rooting of seed plants and the phylogenetic position of flowering plants

(2010) S. Mathews et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Using Fossils to Break Long Branches in Molecular Dating: A Comparison of Relaxed Clocks Applied to the Origin of Angiosperms

(2010) Susana Magallón   SYSTEMATIC BIOLOGY

Improving Marginal Likelihood Estimation for Bayesian Phylogenetic Model Selection

(2010) Wangang Xie et al.   SYSTEMATIC BIOLOGY

Early Cretaceous mesofossils from Portugal and eastern North America related to the Bennettitales-Erdtmanithecales-Gnetales group

(2009) Else Marie Friis et al.   AMERICAN JOURNAL OF BOTANY

Reconstructing the ancestral angiosperm flower and its initial specializations

(2009) Peter K. Endress et al.   AMERICAN JOURNAL OF BOTANY

Distinguishing angiophytes from the earliest angiosperms: A Lower Cretaceous (Valanginian-Hauterivian) fruit-like reproductive structure

(2009) Ruth A. Stockey et al.   AMERICAN JOURNAL OF BOTANY

Is the anthophyte hypothesis alive and well? New evidence from the reproductive structures of Bennettitales

(2009) Gar W. Rothwell et al.   AMERICAN JOURNAL OF BOTANY

The biogeographic history of beech trees

(2009) Thomas Denk et al.   REVIEW OF PALAEOBOTANY AND PALYNOLOGY

Ovule development: genetic trends and evolutionary considerations

(2009) Dior R. Kelley et al.   SEXUAL PLANT REPRODUCTION

Phylogenetic relationships among seed plants: Persistent questions and the limits of molecular data

(2008) Sarah Mathews   AMERICAN JOURNAL OF BOTANY

Integrating Molecular Phylogenetic and Paleobotanical Evidence on Origin of the Flower

(2008) James A. Doyle   INTERNATIONAL JOURNAL OF PLANT SCIENCES