Article
Zoology
Hossein Barahoei, Lorenzo Prendini, Shahrokh Navidpour, H. Muhammad Tahir, Mansour Aliabadian, Roohollah Siahsarvie, Omid Mirshamsi
Summary: This study presents a comprehensive investigation of the diversity of the Odontobuthus genus in Iran, identifying three new species and providing new morphological diagnoses and an identification key. The systematic relationships among the nine species were determined through statistical and molecular analyses, highlighting the endemic or subendemic nature of six species on the Iranian Plateau.
ZOOLOGICAL JOURNAL OF THE LINNEAN SOCIETY
(2022)
Article
Multidisciplinary Sciences
Paula C. Rodriguez Flores, Kareen E. Schnabel
Summary: The Hawaiian Archipelago is a potential hotspot for marine invertebrate research, but there is limited sampling of squat lobsters in this region. A new species, Munidopsis hawaii sp. nov., has been discovered and described using an integrative approach including micro-CT 3D imaging. Phylogenetic analysis indicates that this species diverges from morphologically similar ones, and genetic distance analysis reveals differences between Hawaiian and West Pacific populations of the same species.
Article
Agriculture, Dairy & Animal Science
Caiwen Zhang, Kai Liu, Ruyi Huang, Tingli Hu, Lei Yu, Ruolei Sun, Yucai Zhang, Jing Wen, Baowei Zhang
Summary: A new species of odd-scaled snake, Achalinus dabieshanensis sp. nov., has been discovered in Dabie Mountains, Anhui Province, China. Genetic analysis shows a significant divergence between this new species and its congeners (p-distance >= 9.4%). Morphologically, the new species can be distinguished from others by 12 specific characteristics, bringing the total number of described Achalinus species to 22.
Article
Evolutionary Biology
Alessandra Riccieri, Emiliano Mancini, Monica Pitzalis, Daniele Salvi, Marco A. Bologna
Summary: This study investigates the phylogeny of the tribe Lyttini in the beetle family Meloidae and tests for its monophyly. The study uses a comprehensive molecular dataset and finds 11 phylogenetically distinct lineages within Lyttini. The boundaries of this tribe prove to be hard to define. Based on the results, the tribe is restricted to specific genera and new nomenclatural acts are proposed.
SYSTEMATIC ENTOMOLOGY
(2022)
Article
Biochemistry & Molecular Biology
Marusa Skubic, Eliska Zaveska, Bozo Frajman
Summary: The Mediterranean Basin is considered a Global Biodiversity Hotspot, but its diversity is unevenly distributed, with the Ligurian Alps in Italy having a high number of endemic species. A disjunct population of the Italian endemic Euphorbia barrelieri was found at the foot of the Ligurian Alps. Through various methods, researchers determined that these populations are tetraploid and have originated from a combination of E. barrelieri and E. nicaeensis. This study highlights the importance of polyploidization in plant diversification, emphasizes the biodiversity value of the Ligurian Alps, and underscores the significance of integrative taxonomic approaches in uncovering hidden diversity.
MOLECULAR PHYLOGENETICS AND EVOLUTION
(2023)
Article
Evolutionary Biology
Victoria J. C. Holzer, Juliane Kretschmann, Johanna Knechtel, Pawel M. Owsianny, Marc Gottschling
Summary: The contemporary delimitation of species and populations in the microbial domain relies on an integrative approach combining molecular and morphological techniques. In the case of Peridinium volzii, it remains unclear whether reported infraspecific taxonomic entities correspond to stable traits within reproductively isolated units or represent intraspecific variability. The molecular tree showed P. volzii to be monophyletic, sister group of Peridinium willei, with three distinguishable ITS ribotypes.
ORGANISMS DIVERSITY & EVOLUTION
(2022)
Article
Plant Sciences
Eugeny V. Boltenkov, Elena V. Artyukova
Summary: This study conducted molecular and morphological analyses to investigate the taxonomic composition and relationships within I. sect. Psammiris. The results supported the monophyly of the section and proposed a novel classification, as well as providing updated information on the species and a new identification key.
Article
Zoology
Jeremy Horowitz, Dennis M. Opresko, Maria del P. Gonzalez-Garcia, Andrea M. Quattrini
Summary: A new species of black coral, Aphanipathes puertoricoensis sp. nov., with unique morphological features distinct from other species in the same genus has been discovered. The study highlights the importance of exploring deep waters in the Caribbean Sea to further understand black coral diversity.
Article
Zoology
Sergio Jimenez Pinadero, Daniel Fernandez Marchan, Marta Novo, Dolores Trigo, Jorge Dominguez, Dario J. Diaz Cosin
Summary: Molecular phylogenetics has made significant contributions to earthworm taxonomy, particularly in studying the Lumbricidae genus. This study investigated Zophoscolex species and found that they do not belong to a single clade. Z. atlanticus was closely related to several other species, while other species belong to different genera.
ZOOLOGICAL JOURNAL OF THE LINNEAN SOCIETY
(2022)
Article
Plant Sciences
Shi-xiong Ding, Hui-hua Liu, Ben-zhong Wang, S. H. U. A. Peng, H. U. Jiang, Fredrick munyao Mutie, Emmanuel nyongesa Waswa, Guang-wan Hu
Summary: A new variety of Balsaminaceae, Impatiens piufanensis var. villosa, from Hubei and Hunan, China, is described and illustrated in this study. It can be distinguished from the nominate variety by its stem, leaves, sepals, petal midvein, and covered puberulent peduncles and pedicels. The phylogenetic analysis based on ITS sequence also supports its classification as a new variety of I. piufanensis.
Article
Zoology
Ana Laura Almeida, Marta Alvarez-Presas, Fernando Carbayo
Summary: This study re-assesses the systematics of two subfamilies of land planarians endemic to the Neotropical region, and proposes nine new Chilean species, five new genera, and seven new tribes. The results also provide biogeographic insights into Transandiplana.
ZOOLOGICAL JOURNAL OF THE LINNEAN SOCIETY
(2023)
Article
Plant Sciences
Nicholas P. Tippery, Donald H. Les, Klaus J. Appenroth, K. Sowjanya Sree, Daniel J. Crawford, Manuela Bog
Summary: The classification of duckweeds as a subfamily of the expanded family Araceae rather than a separate family has sparked debates in the field of botanical taxonomy. The proposal to restore the subfamily Orontioideae to family status as Orontiaceae aims to maintain stability and utility in plant classification.
Article
Zoology
Zening Chen, Shengchao Shi, Jun Gao, Gernot Vogel, Zhaobin Song, Li Ding, Rong Dai
Summary: A new species, Trimeresurus guoi, was discovered in Jiangcheng and Simao, Yunnan Province, China, previously allocated to T. albolabris. This new species is morphologically and genetically distinct from other known species of the subgenus Trimeresurus.
ASIAN HERPETOLOGICAL RESEARCH
(2021)
Article
Plant Sciences
Yurij O. Tynkevich, Antonina Y. Shelyfist, Liudmyla Kozub, Vera Hemleben, Irina I. Panchuk, Roman A. Volkov
Summary: This study evaluates the molecular organization and diversity of the intergenic spacer region (IGS) in the Solanum genus. The study finds that the main mechanism of IGS molecular evolution is the step-wise accumulation of single base substitution or short indels. The study also reconstructs the phylogeny of the Solanum genus using IGS sequences but identifies certain species that differ from previous results and require further clarification.
FRONTIERS IN PLANT SCIENCE
(2022)
Article
Biochemistry & Molecular Biology
Nian Wang, Laura J. Kelly, Hugh A. McAllister, Jasmin Zohren, Richard J. A. Buggs
Summary: This study utilized RAD sequences to generate genome-wide sequence reads for 27 diploid and 36 polyploid Betula species, and reconstructed the evolutionary relationships among these species using supermatrix and species tree methods. The research identified the complex reticulate origins of the majority of polyploid taxa in the genus Betula, leading to the proposal of splitting Betula into two subgenera based on differences in seed-wing morphology.
MOLECULAR PHYLOGENETICS AND EVOLUTION
(2021)
Article
Plant Sciences
Abubakar Bello, Fatima Batul Mukhtar, Alexandra Nora Muellner-Riehl
Summary: This study presents a comprehensive checklist and analysis of Fabaceae species in Nigeria, revealing a significant diversity of legumes predominantly found in the savanna vegetation. The most common subfamilies were Papilionoideae and Caesalpinioideae, with a high number of new records for the country.
Article
Ecology
Yong-Sheng Chen, Chun-Xia Zeng, Alexandra N. Muellner-Riehl, Zhi-Heng Wang, Lu Sun, Johann Schinnerl, Sumet Kongkiatpaiboon, Yuichi Kadota, Xiang-Hai Cai, Gao Chen
Summary: The research investigated 75% of the species diversity in the Stemonaceae family to reconstruct its biogeographic history. The results showed that hornet-dispersed Stemonaceae species have broader geographic ranges compared to ant-dispersed species, indicating the important role of invertebrate-mediated dispersal in shaping the current distribution of species.
JOURNAL OF BIOGEOGRAPHY
(2021)
Article
Plant Sciences
Adrien Favre, Juraj Paule, Jana Ebersbach
Summary: The biodiversity of Gentiana in the European Alpine System is influenced by a combination of factors such as chromosome variation, climatic preferences, and bedrock preferences. These factors play varying roles in the diversification of Gentiana over time and across different clades. Despite phylogenetic incongruences, a complex interaction among climatic, geological, and biotic attributes appear to support the diversification of Gentiana in Europe.
Review
Plant Sciences
Alexandra N. Muellner-Riehl, Blanca M. Rojas-Andres
Summary: The article provides an overview of the woody angiosperm family Meliaceae, covering the genera and species found globally and their geographic distribution. It also reviews the land connections between different continents since the Upper Cretaceous period and discusses the dispersal paths between Africa and South America. Fossil records and biogeographic studies suggest the family has utilized these routes for distribution, with certain genera having transatlantic disjunctions and rich fossil records in different continents.
BRAZILIAN JOURNAL OF BOTANY
(2022)
Article
Plant Sciences
Jana Ebersbach, Nazifa Azam Khan, Ian McQuillan, Erin E. Higgins, Kyla Horner, Venkat Bandi, Carl Gutwin, Sally Lynne Vail, Steve J. Robinson, Isobel A. P. Parkin
Summary: Phenotyping is important for crop improvement. This study assesses the feasibility of using high-throughput phenotyping, image processing, and machine learning to capture the phenotypic diversity of agronomically important traits in Brassica napus. The results demonstrate the potential of machine learning for phenotyping studies, particularly for complex traits such as drought stress resistance.
FRONTIERS IN PLANT SCIENCE
(2022)
Article
Plant Sciences
Susanne Gramlich, Xiaodong Liu, Adrien Favre, C. Alex Buerkle, Sophie Karrenberg
Summary: This study investigates the genetic architecture of habitat-dependent fitness and its contribution to lineage divergence. The results show a polygenic architecture of cumulative flowering, with alleles having beneficial or deleterious effects in one habitat and neutral effects in the other. This pattern may result from differences in selection targets and environmentally dependent deleterious load. The study further suggests that selection for native alleles and against non-native alleles acts as a barrier to gene flow between species.
Article
Plant Sciences
Jay Edneil C. Olivar, Hannah J. Atkins, Gemma L. C. Bramley, Pieter B. Pelser, Frank Hauenschild, Alexandra N. Muellner-Riehl
Summary: A taxonomic synopsis of the Philippine Cyrtandra genus is presented, accepting 98 species endemic to the country. Lectotypes or neotypes are designated for all names, except for six with missing original material. Two replacement names are proposed and a look-up table is provided for easy referencing.
Article
Multidisciplinary Sciences
Paul T. Lyam, Joaquin Duque-Lazo, Frank Hauenschild, Jan Schnitzler, Alexandra N. Muellner-Riehl, Michelle Greve, Henry Ndangalasi, Annerine Myburgh, Walter Durka
Summary: Global climate change is affecting biodiversity in drylands, and the response of species to climate change can differ among genetic groups. In this study, phylogeographic groups were identified within Senegalia senegal populations in sub-Saharan Africa using molecular data. The future distribution of these phylogeographic groups under climate change scenarios was predicted, showing significant differences in range reduction or expansion.
SCIENTIFIC REPORTS
(2022)
Article
Ecology
Peng-Cheng Fu, Shi-Long Chen, Shan-Shan Sun, Adrien Favre
Summary: This study sequenced and analyzed the plastomes of 21 species in Gentiana section Chondrophyllae sensu lato to reconstruct their phylogenetic relationships. The results revealed a well-supported phylogenetic tree and significant discordance between phylogenetic relationships and taxonomic treatments. The study also investigated plastome structural evolution and divergence time, indicating that section Chondrophyllae s.l. evolved in the second half of the Oligocene.
ECOLOGY AND EVOLUTION
(2022)
Article
Plant Sciences
Peng-Cheng Fu, Shan-Shan Sun, Peter M. Hollingsworth, Shi-Long Chen, Adrien Favre, Alex D. Twyford
Summary: Understanding the processes driving population differentiation and speciation is crucial for understanding biodiversity formation. This study focuses on the Gentiana hexaphylla complex in the Hengduan Mountains, and investigates the link between genetic processes and biogeographic history in the region. The results show that the G. hexaphylla complex exhibits geographic genetic structure, with distinct clusters corresponding to different regions in the Hengduan Mountains. Phylogenetic reconstructions and ancestral range estimations suggest that the complex originated in the central Hengduan Mountains, underwent differentiation in the Pliocene and the Early Pleistocene, and then dispersed widely to form different lineages. The study highlights the role of geographic barriers and climatic fluctuations in diversification.
FRONTIERS IN PLANT SCIENCE
(2022)
Article
Plant Sciences
Shan-S. Sun, Yuan-L. Guo, Adrien Favre, Peng-C. Fu
Summary: This study investigates the genetic structure and evolutionary processes of two medicinal Gentiana species in the Qinghai-Tibet Plateau region. The results reveal high genetic differentiation and recent population expansion in both species. Species distribution modelling shows continuous range expansion from the Last Interglacial to the present. The intraspecific divergence is related to topographical complexity, geological features, and geographical isolation during glaciations.
JOURNAL OF APPLIED RESEARCH ON MEDICINAL AND AROMATIC PLANTS
(2022)
Article
Ecology
Xi-Ling Deng, Paul B. B. Frandsen, Rebecca B. B. Dikow, Adrien Favre, Deep Narayan Shah, Ram Devi Tachamo Shah, Julio V. V. Schneider, Jacqueline Heckenhauer, Steffen U. U. Pauls
Summary: Whole genome sequencing for generating SNP data is commonly used in population genetic studies. This study investigates the effect of reference genome and sequencing depth on downstream analyses in caddisfly species. The results show that distantly related reference genomes and lower sequencing depth lead to decreased resolution, but a more closely related reference genome can compensate for the defects caused by low depth. Therefore, population genetic studies can benefit from closely related reference genomes, and a trade-off between reference genome relatedness and sequencing depth should be considered for cost-efficient strategies.
ECOLOGY AND EVOLUTION
(2022)
Article
Plant Sciences
Kristian Peters, Kaitlyn L. Blatt-Janmaat, Natalia Tkach, Nicole M. van Dam, Steffen Neumann
Summary: This study aimed to establish an untargeted metabolomics approach for chemotaxonomy. By integrating DNA sequencing, bioimaging, and mass spectrometry, multiple chemophenetic markers were identified to distinguish different taxonomic groups. This untargeted chemotaxonomy method provides more mechanistic insight into species classification but further integration of analytical and bioinformatics methods is needed.
Review
Biodiversity Conservation
Ardalan Pasdaran, Zheko Naychov, Daniela Batovska, Philip Kerr, Adrien Favre, Vladimir Dimitrov, Ina Aneva, Azadeh Hamedi, Ekaterina Kozuharova
Summary: Wound care is a crucial task in surgical specialties, and medicinal plants like Gentiana species show potential for wound healing. Traditional knowledge identifies several Gentiana species, such as Gentiana lutea and G. punctata, as effective remedies for wounds. However, further pharmacological studies are needed to explore their potential. Due to the declining numbers and conservation status of these plants, cultivation and micropropagation methods are essential for developing new drugs based on Gentian extracts.