The Species versus Subspecies Conundrum: Quantitative Delimitation from Integrating Multiple Data Types within a Single Bayesian Approach in Hercules Beetles

The Biogeography of Adaptive Radiations and the Geographic Overlap of Sister Species

(2015) Mikael Pontarp et al.   AMERICAN NATURALIST

Bayesian species delimitation combining multiple genes and traits in a unified framework

(2015) Claudia Solís-Lemus et al.   EVOLUTION

Unguided Species Delimitation Using DNA Sequence Data from Multiple Loci

(2014) Z. Yang et al.   MOLECULAR BIOLOGY AND EVOLUTION

The advantages of going large: genome-wide SNPs clarify the complex population history and systematics of the threatened western pond turtle

(2014) Phillip Q. Spinks et al.   MOLECULAR ECOLOGY

Species detection and individual assignment in species delimitation: can integrative data increase efficacy?

(2014) D. L. Edwards et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Bayesian Species Delimitation Can Be Robust to Guide-Tree Inference Errors

(2014) Chi Zhang et al.   SYSTEMATIC BIOLOGY

A South American Origin of the GenusDynastes(Coleoptera: Scarabaeidae: Dynastinae) Demonstrated by Chromosomal Analyses

(2013) B. Dutrillaux et al.   CYTOGENETIC AND GENOME RESEARCH

Using biogeographical history to inform conservation: the case of Preble's meadow jumping mouse

(2013) Jason L. Malaney et al.   MOLECULAR ECOLOGY

How to fail at species delimitation

(2013) Bryan C. Carstens et al.   MOLECULAR ECOLOGY

An empirical comparison of character-based and coalescent-based approaches to species delimitation in a young avian complex

(2013) Bailey D. McKay et al.   MOLECULAR ECOLOGY

Ecological niche models in phylogeographic studies: applications, advances and precautions

(2013) Diego F. Alvarado-Serrano et al.   Molecular Ecology Resources

How low can you go? The effects of mutation rate on the accuracy of species-tree estimation

(2013) Hayley C. Lanier et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Upstream Analyses Create Problems with DNA-Based Species Delimitation

(2013) Melisa Olave et al.   SYSTEMATIC BIOLOGY

geomorph: anrpackage for the collection and analysis of geometric morphometric shape data

(2013) Dean C. Adams et al.   Methods in Ecology and Evolution

Bayesian Phylogenetics with BEAUti and the BEAST 1.7

(2012) Alexei J. Drummond et al.   MOLECULAR BIOLOGY AND EVOLUTION

Identifying biases at different spatial and temporal scales of diversification: a case study in the Neotropical parrotlet genusForpus

(2012) Brian Tilston Smith et al.   MOLECULAR ECOLOGY

jModelTest 2: more models, new heuristics and parallel computing

(2012) Diego Darriba et al.   NATURE METHODS

Single-locus species delimitation: a test of the mixed Yule-coalescent model, with an empirical application to Philippine round-leaf bats

(2012) J. A. Esselstyn et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Coalescent-based species delimitation in an integrative taxonomy

(2012) Matthew K. Fujita et al.   TRENDS IN ECOLOGY & EVOLUTION

Evaluation of a Bayesian Coalescent Method of Species Delimitation

(2011) Chi Zhang et al.   SYSTEMATIC BIOLOGY

DendroPy: a Python library for phylogenetic computing

(2010) J. Sukumaran et al.   BIOINFORMATICS

ENMTools: a toolbox for comparative studies of environmental niche models

(2010) Dan L. Warren et al.   ECOGRAPHY

TESTING ECOLOGICAL EXPLANATIONS FOR BIOGEOGRAPHIC BOUNDARIES

(2010) Richard E. Glor et al.   EVOLUTION

Bayesian species delimitation using multilocus sequence data

(2010) Z. Yang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Sources of Error Inherent in Species-Tree Estimation: Impact of Mutational and Coalescent Effects on Accuracy and Implications for Choosing among Different Methods

(2010) Huateng Huang et al.   SYSTEMATIC BIOLOGY

The art of modelling range-shifting species

(2010) Jane Elith et al.   Methods in Ecology and Evolution

The Brazilian Atlantic Forest: How much is left, and how is the remaining forest distributed? Implications for conservation

(2009) Milton Cezar Ribeiro et al.   BIOLOGICAL CONSERVATION

DOES NICHE DIVERGENCE ACCOMPANY ALLOPATRIC DIVERGENCE INAPHELOCOMAJAYS AS PREDICTED UNDER ECOLOGICAL SPECIATION?: INSIGHTS FROM TESTS WITH NICHE MODELS

(2009) John E. McCormack et al.   EVOLUTION

Maximum Likelihood Estimates of Species Trees: How Accuracy of Phylogenetic Inference Depends upon the Divergence History and Sampling Design

(2009) John E. McCormack et al.   SYSTEMATIC BIOLOGY

New Heuristic Methods for Joint Species Delimitation and Species Tree Inference

(2009) Brian C. O'Meara   SYSTEMATIC BIOLOGY

Ecological explanations for (incomplete) speciation

(2009) Patrik Nosil et al.   TRENDS IN ECOLOGY & EVOLUTION

ENVIRONMENTAL NICHE EQUIVALENCY VERSUS CONSERVATISM: QUANTITATIVE APPROACHES TO NICHE EVOLUTION

(2008) Dan L. Warren et al.   EVOLUTION