Ancestral State Reconstruction, Rate Heterogeneity, and the Evolution of Reptile Viviparity

Model Inadequacy and Mistaken Inferences of Trait-Dependent Speciation

(2015) Daniel L. Rabosky et al.   SYSTEMATIC BIOLOGY

Evolution of an Evolutionary Hypothesis: A History of Changing Ideas about the Adaptive Significance of Viviparity in Reptiles

(2014) Richard Shine   JOURNAL OF HERPETOLOGY

Dubious resolution and support from published sparse supermatrices: The importance of thorough tree searches

(2014) Mark P. Simmons et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Automatic Detection of Key Innovations, Rate Shifts, and Diversity-Dependence on Phylogenetic Trees

(2014) Daniel L. Rabosky   PLoS One

A phylogeny and revised classification of Squamata, including 4161 species of lizards and snakes

(2013) R Pyron et al.   BMC EVOLUTIONARY BIOLOGY

Exploring power and parameter estimation of the BiSSE method for analyzing species diversification

(2013) Matthew P Davis et al.   BMC EVOLUTIONARY BIOLOGY

Early origin of viviparity and multiple reversions to oviparity in squamate reptiles

(2013) R. Alexander Pyron et al.   ECOLOGY LETTERS

ANCESTRAL CHARACTER ESTIMATION UNDER THE THRESHOLD MODEL FROM QUANTITATIVE GENETICS

(2013) Liam J. Revell   EVOLUTION

EVOLUTION OF VIVIPARITY: A PHYLOGENETIC TEST OF THE COLD-CLIMATE HYPOTHESIS IN PHRYNOSOMATID LIZARDS

(2013) Shea M. Lambert et al.   EVOLUTION

The evolution of viviparity opens opportunities for lizard radiation but drives it into a climatic cul-de-sac

(2013) Daniel Pincheira-Donoso et al.   GLOBAL ECOLOGY AND BIOGEOGRAPHY

Identifying Hidden Rate Changes in the Evolution of a Binary Morphological Character: The Evolution of Plant Habit in Campanulid Angiosperms

(2013) Jeremy M. Beaulieu et al.   SYSTEMATIC BIOLOGY

Bayesian Phylogenetics with BEAUti and the BEAST 1.7

(2012) Alexei J. Drummond et al.   MOLECULAR BIOLOGY AND EVOLUTION

Estimating Speciation and Extinction Rates for Phylogenies of Higher Taxa

(2012) Tanja Stadler et al.   SYSTEMATIC BIOLOGY

Diversitree: comparative phylogenetic analyses of diversification in R

(2012) Richard G. FitzJohn   Methods in Ecology and Evolution

Phylogenetic Insights on Evolutionary Novelties in Lizards and Snakes: Sex, Birth, Bodies, Niches, and Venom

(2011) Jack W. Sites et al.   Annual Review of Ecology Evolution and Systematics

A NOVEL COMPARATIVE METHOD FOR IDENTIFYING SHIFTS IN THE RATE OF CHARACTER EVOLUTION ON TREES

(2011) Jonathan M. Eastman et al.   EVOLUTION

The serpent and the egg: unidirectional evolution of reproductive mode in vipers?

(2011) Allyson M. Fenwick et al.   JOURNAL OF ZOOLOGICAL SYSTEMATICS AND EVOLUTIONARY RESEARCH

Terraces in Phylogenetic Tree Space

(2011) M. J. Sanderson et al.   SCIENCE

RBrownie: an R package for testing hypotheses about rates of evolutionary change

(2011) J. Conrad Stack et al.   Methods in Ecology and Evolution

phytools: an R package for phylogenetic comparative biology (and other things)

(2011) Liam J. Revell   Methods in Ecology and Evolution

Bayesian random local clocks, or one rate to rule them all

(2010) Alexei J Drummond et al.   BMC BIOLOGY

Rate Heterogeneity, Ancestral Character State Reconstruction, and the Evolution of Limb Morphology in Lerista (Scincidae, Squamata)

(2010) Adam Skinner   SYSTEMATIC BIOLOGY

Improving Marginal Likelihood Estimation for Bayesian Phylogenetic Model Selection

(2010) Wangang Xie et al.   SYSTEMATIC BIOLOGY

Diversity dynamics: molecular phylogenies need the fossil record

(2010) Tiago B. Quental et al.   TRENDS IN ECOLOGY & EVOLUTION

EXTINCTION RATES SHOULD NOT BE ESTIMATED FROM MOLECULAR PHYLOGENIES

(2009) Daniel L. Rabosky   EVOLUTION

DID EGG-LAYING BOAS BREAK DOLLO'S LAW? PHYLOGENETIC EVIDENCE FOR REVERSAL TO OVIPARITY IN SAND BOAS (ERYX: BOIDAE)

(2009) Vincent J. Lynch et al.   EVOLUTION

Estimating Trait-Dependent Speciation and Extinction Rates from Incompletely Resolved Phylogenies

(2009) Richard G. FitzJohn et al.   SYSTEMATIC BIOLOGY

Morphology, development, and evolution of fetal membranes and placentation in squamate reptiles

(2008) Daniel G. Blackburn et al.   JOURNAL OF EXPERIMENTAL ZOOLOGY PART B-MOLECULAR AND DEVELOPMENTAL EVOLUTION

Reversing opinions on Dollo’s Law

(2008) Rachel Collin et al.   TRENDS IN ECOLOGY & EVOLUTION