Updates in Rhea—a manually curated resource of biochemical reactions

Profiling the orphan enzymes

(2014) Maria Sorokina et al.   Biology Direct

Genome-scale metabolic reconstructions of Bifidobacterium adolescentis L2-32 and Faecalibacterium prausnitzii A2-165 and their interaction

(2014) Ibrahim E El-Semman et al.   BMC Systems Biology

EC-BLAST: a tool to automatically search and compare enzyme reactions

(2014) Syed Asad Rahman et al.   NATURE METHODS

Activities at the Universal Protein Resource (UniProt)

(2014)   NUCLEIC ACIDS RESEARCH

Finding Sequences for over 270 Orphan Enzymes

(2014) Alexander G. Shearer et al.   PLoS One

MetaNetX.org: a website and repository for accessing, analysing and manipulating metabolic networks

(2013) M. Ganter et al.   BIOINFORMATICS

Dovetailing biology and chemistry: integrating the Gene Ontology with the ChEBI chemical ontology

(2013) David P Hill et al.   BMC GENOMICS

An updated metabolic view of the Bacillus subtilis 168 genome

(2013) E. Belda et al.   MICROBIOLOGY-SGM

Metabolic tinker: an online tool for guiding the design of synthetic metabolic pathways

(2013) Kent McClymont et al.   NUCLEIC ACIDS RESEARCH

The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases

(2013) Ron Caspi et al.   NUCLEIC ACIDS RESEARCH

The Reactome pathway knowledgebase

(2013) David Croft et al.   NUCLEIC ACIDS RESEARCH

Data, information, knowledge and principle: back to metabolism in KEGG

(2013) Minoru Kanehisa et al.   NUCLEIC ACIDS RESEARCH

Rapid Identification of Sequences for Orphan Enzymes to Power Accurate Protein Annotation

(2013) Kevin R. Ramkissoon et al.   PLoS One

Reconciliation of metabolites and biochemical reactions for metabolic networks

(2012) T. Bernard et al.   BRIEFINGS IN BIOINFORMATICS

The EBI enzyme portal

(2012) Rafael Alcántara et al.   NUCLEIC ACIDS RESEARCH

MicroScope—an integrated microbial resource for the curation and comparative analysis of genomic and metabolic data

(2012) David Vallenet et al.   NUCLEIC ACIDS RESEARCH

The ChEBI reference database and ontology for biologically relevant chemistry: enhancements for 2013

(2012) Janna Hastings et al.   NUCLEIC ACIDS RESEARCH

EcoCyc: fusing model organism databases with systems biology

(2012) Ingrid M. Keseler et al.   NUCLEIC ACIDS RESEARCH

MetaboLights—an open-access general-purpose repository for metabolomics studies and associated meta-data

(2012) Kenneth Haug et al.   NUCLEIC ACIDS RESEARCH

Rhea—a manually curated resource of biochemical reactions

(2011) Rafael Alcántara et al.   NUCLEIC ACIDS RESEARCH

MACiE: exploring the diversity of biochemical reactions

(2011) Gemma L. Holliday et al.   NUCLEIC ACIDS RESEARCH

UniPathway: a resource for the exploration and annotation of metabolic pathways

(2011) Anne Morgat et al.   NUCLEIC ACIDS RESEARCH

The BioPAX community standard for pathway data sharing

(2010) Emek Demir et al.   NATURE BIOTECHNOLOGY