Creating and validating cis-regulatory maps of tissue-specific gene expression regulation
出版年份 2014 全文链接
标题
Creating and validating cis-regulatory maps of tissue-specific gene expression regulation
作者
关键词
-
出版物
NUCLEIC ACIDS RESEARCH
Volume 42, Issue 17, Pages 11000-11010
出版商
Oxford University Press (OUP)
发表日期
2014-09-09
DOI
10.1093/nar/gku801
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- An atlas of active enhancers across human cell types and tissues
- (2014) Robin Andersson et al. NATURE
- Master Transcription Factors and Mediator Establish Super-Enhancers at Key Cell Identity Genes
- (2013) Warren A. Whyte et al. CELL
- Super-Enhancers in the Control of Cell Identity and Disease
- (2013) Denes Hnisz et al. CELL
- Interplay between chromatin state, regulator binding, and regulatory motifs in six human cell types
- (2013) J. Ernst et al. GENOME RESEARCH
- Genome-wide in silico prediction of gene expression
- (2012) Robert C. McLeay et al. BIOINFORMATICS
- A map of the cis-regulatory sequences in the mouse genome
- (2012) Yin Shen et al. NATURE
- Topological domains in mammalian genomes identified by analysis of chromatin interactions
- (2012) Jesse R. Dixon et al. NATURE
- Unsupervised pattern discovery in human chromatin structure through genomic segmentation
- (2012) Michael M Hoffman et al. NATURE METHODS
- ChromHMM: automating chromatin-state discovery and characterization
- (2012) Jason Ernst et al. NATURE METHODS
- UCNEbase—a database of ultraconserved non-coding elements and genomic regulatory blocks
- (2012) Slavica Dimitrieva et al. NUCLEIC ACIDS RESEARCH
- Integrative annotation of chromatin elements from ENCODE data
- (2012) Michael M. Hoffman et al. NUCLEIC ACIDS RESEARCH
- Inferring direct DNA binding from ChIP-seq
- (2012) Timothy L. Bailey et al. NUCLEIC ACIDS RESEARCH
- Classification of human genomic regions based on experimentally determined binding sites of more than 100 transcription-related factors
- (2012) Kevin Y Yip et al. GENOME BIOLOGY
- Mapping and analysis of chromatin state dynamics in nine human cell types
- (2011) Jason Ernst et al. NATURE
- Relationship between Gene Body DNA Methylation and Intragenic H3K9me3 and H3K36me3 Chromatin Marks
- (2011) Maria A. Hahn et al. PLoS One
- Motif Enrichment Analysis: a unified framework and an evaluation on ChIP data
- (2010) Robert C McLeay et al. BMC BIOINFORMATICS
- Histone H3K27ac separates active from poised enhancers and predicts developmental state
- (2010) M. P. Creyghton et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Integrative Analysis of the Caenorhabditis elegans Genome by the modENCODE Project
- (2010) M. B. Gerstein et al. SCIENCE
- Next-generation DNA sequencing of paired-end tags (PET) for transcriptome and genome analyses
- (2009) M. J. Fullwood et al. GENOME RESEARCH
- Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
- (2009) Da Wei Huang et al. Nature Protocols
- ChIP–seq: advantages and challenges of a maturing technology
- (2009) Peter J. Park NATURE REVIEWS GENETICS
- MEME SUITE: tools for motif discovery and searching
- (2009) T. L. Bailey et al. NUCLEIC ACIDS RESEARCH
- ChIP-Seq of transcription factors predicts absolute and differential gene expression in embryonic stem cells
- (2009) Z. Ouyang et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Systematic functional characterization of cis-regulatory motifs in human core promoters
- (2008) S. Sinha et al. GENOME RESEARCH
- Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists
- (2008) Da Wei Huang et al. NUCLEIC ACIDS RESEARCH
Add your recorded webinar
Do you already have a recorded webinar? Grow your audience and get more views by easily listing your recording on Peeref.
Upload NowAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started