metaseq: a Python package for integrative genome-wide analysis reveals relationships between chromatin insulators and associated nuclear mRNA
出版年份 2014 全文链接
标题
metaseq: a Python package for integrative genome-wide analysis reveals relationships between chromatin insulators and associated nuclear mRNA
作者
关键词
-
出版物
NUCLEIC ACIDS RESEARCH
Volume 42, Issue 14, Pages 9158-9170
出版商
Oxford University Press (OUP)
发表日期
2014-07-26
DOI
10.1093/nar/gku644
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- ngs.plot: Quick mining and visualization of next-generation sequencing data by integrating genomic databases
- (2014) Li Shen et al. BMC GENOMICS
- The RNA-binding protein Rumpelstiltskin antagonizes gypsy chromatin insulator function in a tissue-specific manner
- (2014) M. R. King et al. JOURNAL OF CELL SCIENCE
- deepTools: a flexible platform for exploring deep-sequencing data
- (2014) Fidel Ramírez et al. NUCLEIC ACIDS RESEARCH
- Surviving an identity crisis: A revised view of chromatin insulators in the genomics era
- (2013) Leah H. Matzat et al. Biochimica et Biophysica Acta-Gene Regulatory Mechanisms
- CruzDB: software for annotation of genomic intervals with UCSC genome-browser database
- (2013) Brent S. Pedersen et al. BIOINFORMATICS
- Messenger RNA is a functional component of a chromatin insulator complex
- (2013) Leah H Matzat et al. EMBO REPORTS
- Dynein-Dependent Transport of nanos RNA in Drosophila Sensory Neurons Requires Rumpelstiltskin and the Germ Plasm Organizer Oskar
- (2013) X. Xu et al. JOURNAL OF NEUROSCIENCE
- High-throughput sequencing for biology and medicine
- (2013) W. W. Soon et al. Molecular Systems Biology
- A compendium of RNA-binding motifs for decoding gene regulation
- (2013) Debashish Ray et al. NATURE
- TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions
- (2013) Daehwan Kim et al. GENOME BIOLOGY
- Genome Regulation by Long Noncoding RNAs
- (2012) John L. Rinn et al. Annual Review of Biochemistry
- The UCSC genome browser and associated tools
- (2012) R. M. Kuhn et al. BRIEFINGS IN BIOINFORMATICS
- Nature and function of insulator protein binding sites in the Drosophila genome
- (2012) Y. B. Schwartz et al. GENOME RESEARCH
- Df31 Protein and snoRNAs Maintain Accessible Higher-Order Structures of Chromatin
- (2012) Thomas Schubert et al. MOLECULAR CELL
- Tissue-Specific Regulation of Chromatin Insulator Function
- (2012) Leah H. Matzat et al. PLoS Genetics
- Pybedtools: a flexible Python library for manipulating genomic datasets and annotations
- (2011) Ryan K. Dale et al. BIOINFORMATICS
- The variant call format and VCFtools
- (2011) P. Danecek et al. BIOINFORMATICS
- A late phase of germ plasm accumulation during Drosophila oogenesis requires Lost and Rumpelstiltskin
- (2011) Kristina S. Sinsimer et al. DEVELOPMENT
- The Genomedata format for storing large-scale functional genomics data
- (2010) M. M. Hoffman et al. BIOINFORMATICS
- BigWig and BigBed: enabling browsing of large distributed datasets
- (2010) W. J. Kent et al. BIOINFORMATICS
- BEDTools: a flexible suite of utilities for comparing genomic features
- (2010) Aaron R. Quinlan et al. BIOINFORMATICS
- Simple Combinations of Lineage-Determining Transcription Factors Prime cis-Regulatory Elements Required for Macrophage and B Cell Identities
- (2010) Sven Heinz et al. MOLECULAR CELL
- Single base–resolution methylome of the silkworm reveals a sparse epigenomic map
- (2010) Hui Xiang et al. NATURE BIOTECHNOLOGY
- Identification of Functional Elements and Regulatory Circuits by Drosophila modENCODE
- (2010) et al. SCIENCE
- ChIA-PET tool for comprehensive chromatin interaction analysis with paired-end tag sequencing
- (2010) Guoliang Li et al. GENOME BIOLOGY
- Differential expression analysis for sequence count data
- (2010) Simon Anders et al. GENOME BIOLOGY
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- Three subclasses of a Drosophila insulator show distinct and cell type-specific genomic distributions
- (2009) A. M. Bushey et al. GENES & DEVELOPMENT
- Unlocking the secrets of the genome
- (2009) Susan E. Celniker et al. NATURE
- The Sanger FASTQ file format for sequences with quality scores, and the Solexa/Illumina FASTQ variants
- (2009) Peter J. A. Cock et al. NUCLEIC ACIDS RESEARCH
- Comprehensive Mapping of Long-Range Interactions Reveals Folding Principles of the Human Genome
- (2009) E. Lieberman-Aiden et al. SCIENCE
- Design and analysis of ChIP-seq experiments for DNA-binding proteins
- (2008) Peter V Kharchenko et al. NATURE BIOTECHNOLOGY
Add your recorded webinar
Do you already have a recorded webinar? Grow your audience and get more views by easily listing your recording on Peeref.
Upload NowCreate your own webinar
Interested in hosting your own webinar? Check the schedule and propose your idea to the Peeref Content Team.
Create Now