Chemical probing of RNA with the hydroxyl radical at single-atom resolution

Computational Analysis of Conserved RNA Secondary Structure in Transcriptomes and Genomes

(2014) Sean R. Eddy   Annual Review of Biophysics

Insights into RNA structure and function from genome-wide studies

(2014) Stefanie A. Mortimer et al.   NATURE REVIEWS GENETICS

Massive parallel-sequencing-based hydroxyl radical probing of RNA accessibility

(2014) Lukasz Jan Kielpinski et al.   NUCLEIC ACIDS RESEARCH

Kinetics and mechanisms of oxidative cleavage of HIV RRE RNA by Rev-coupled transition metal–chelates

(2013) Jeff C. Joyner et al.   Chemical Science

Direct Strand Scission in Double Stranded RNA via a C5-Pyrimidine Radical

(2012) Marino J. E. Resendiz et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

The Mechanisms of RNA SHAPE Chemistry

(2012) Jennifer L. McGinnis et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Three-dimensional RNA structure refinement by hydroxyl radical probing

(2012) Feng Ding et al.   NATURE METHODS

Analysis of RNA cleavage by MALDI-TOF mass spectrometry

(2012) Jeff C. Joyner et al.   NUCLEIC ACIDS RESEARCH

A Map of Minor Groove Shape and Electrostatic Potential from Hydroxyl Radical Cleavage Patterns of DNA

(2011) Eric P. Bishop et al.   ACS Chemical Biology

The Ribotoxin Restrictocin Recognizes Its RNA Substrate by Selective Engagement of Active Site Residues

(2011) Matthew J. Plantinga et al.   BIOCHEMISTRY

Understanding the Sequence Preference of Recurrent RNA Building Blocks Using Quantum Chemistry: The Intrastrand RNA Dinucleotide Platform

(2011) Arnošt Mládek et al.   Journal of Chemical Theory and Computation

Understanding the transcriptome through RNA structure

(2011) Yue Wan et al.   NATURE REVIEWS GENETICS

Multiplexed RNA structure characterization with selective 2'-hydroxyl acylation analyzed by primer extension sequencing (SHAPE-Seq)

(2011) J. B. Lucks et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Activation of DNA Carbon−Hydrogen Bonds by Metal Complexes

(2010) Marguerite Pitié et al.   CHEMICAL REVIEWS

Advances in RNA structure analysis by chemical probing

(2010) Kevin M Weeks   CURRENT OPINION IN STRUCTURAL BIOLOGY

RNA Tetraloop Folding Reveals Tension between Backbone Restraints and Molecular Interactions

(2010) Srividya Mohan et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Genome-wide measurement of RNA secondary structure in yeast

(2010) Michael Kertesz et al.   NATURE

FragSeq: transcriptome-wide RNA structure probing using high-throughput sequencing

(2010) Jason G Underwood et al.   NATURE METHODS

The RNA backbone plays a crucial role in mediating the intrinsic stability of the GpU dinucleotide platform and the GpUpA/GpA miniduplex

(2010) Xiang-Jun Lu et al.   NUCLEIC ACIDS RESEARCH

Isotope labeling strategies for NMR studies of RNA

(2009) Kun Lu et al.   JOURNAL OF BIOMOLECULAR NMR