SHAPE-Seq 2.0: systematic optimization and extension of high-throughput chemical probing of RNA secondary structure with next generation sequencing
出版年份 2014 全文链接
标题
SHAPE-Seq 2.0: systematic optimization and extension of high-throughput chemical probing of RNA secondary structure with next generation sequencing
作者
关键词
-
出版物
NUCLEIC ACIDS RESEARCH
Volume 42, Issue 21, Pages e165-e165
出版商
Oxford University Press (OUP)
发表日期
2014-10-11
DOI
10.1093/nar/gku909
参考文献
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- Landscape and variation of RNA secondary structure across the human transcriptome
- (2014) Yue Wan et al. NATURE
- Mod-seq: high-throughput sequencing for chemical probing of RNA structure
- (2014) J. Talkish et al. RNA
- A hybridization-based approach for quantitative and low-bias single-stranded DNA ligation
- (2013) Chun Kit Kwok et al. ANALYTICAL BIOCHEMISTRY
- The Cellular Environment Stabilizes Adenine Riboswitch RNA Structure
- (2013) Jillian Tyrrell et al. BIOCHEMISTRY
- Principles for Understanding the Accuracy of SHAPE-Directed RNA Structure Modeling
- (2013) Christopher W. Leonard et al. BIOCHEMISTRY
- The centrality of RNA for engineering gene expression
- (2013) James Chappell et al. Biotechnology Journal
- In vivo genome-wide profiling of RNA secondary structure reveals novel regulatory features
- (2013) Yiliang Ding et al. NATURE
- Genome-wide probing of RNA structure reveals active unfolding of mRNA structures in vivo
- (2013) Silvi Rouskin et al. NATURE
- Accurate SHAPE-directed RNA secondary structure modeling, including pseudoknots
- (2013) C. E. Hajdin et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- An RNA Mapping DataBase for curating RNA structure mapping experiments
- (2012) Pablo Cordero et al. BIOINFORMATICS
- RNA SHAPE analysis in living cells
- (2012) Robert C Spitale et al. Nature Chemical Biology
- QuShape: Rapid, accurate, and best-practices quantification of nucleic acid probing information, resolved by capillary electrophoresis
- (2012) F. Karabiber et al. RNA
- Understanding the Errors of SHAPE-Directed RNA Structure Modeling
- (2011) Wipapat Kladwang et al. BIOCHEMISTRY
- HiTRACE: high-throughput robust analysis for capillary electrophoresis
- (2011) Sungroh Yoon et al. BIOINFORMATICS
- Understanding the transcriptome through RNA structure
- (2011) Yue Wan et al. NATURE REVIEWS GENETICS
- Modeling and automation of sequencing-based characterization of RNA structure
- (2011) S. Aviran et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Multiplexed RNA structure characterization with selective 2'-hydroxyl acylation analyzed by primer extension sequencing (SHAPE-Seq)
- (2011) J. B. Lucks et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Advances in RNA structure analysis by chemical probing
- (2010) Kevin M Weeks CURRENT OPINION IN STRUCTURAL BIOLOGY
- SHAPE-directed RNA secondary structure prediction
- (2010) Justin T. Low et al. METHODS
- Genome-wide measurement of RNA secondary structure in yeast
- (2010) Michael Kertesz et al. NATURE
- FragSeq: transcriptome-wide RNA structure probing using high-throughput sequencing
- (2010) Jason G Underwood et al. NATURE METHODS
- The Centrality of RNA
- (2009) Phillip A. Sharp CELL
- Time-resolved RNA SHAPE chemistry: quantitative RNA structure analysis in one-second snapshots and at single-nucleotide resolution
- (2009) Stefanie A Mortimer et al. Nature Protocols
- Accurate SHAPE-directed RNA structure determination
- (2008) K. E. Deigan et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
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