A view through a chromatin loop: insights into the ecdysone activation of early genes in Drosophila

Architectural Protein Subclasses Shape 3D Organization of Genomes during Lineage Commitment

(2013) Jennifer E. Phillips-Cremins et al.   CELL

Genome organization and long-range regulation of gene expression by enhancers

(2013) Andrea Smallwood et al.   CURRENT OPINION IN CELL BIOLOGY

Estrogen represses gene expression through reconfiguring chromatin structures

(2013) Hatice Ulku Osmanbeyoglu et al.   NUCLEIC ACIDS RESEARCH

Gene Density, Transcription, and Insulators Contribute to the Partition of the Drosophila Genome into Physical Domains

(2012) Chunhui Hou et al.   MOLECULAR CELL

CTCF-mediated transcriptional regulation through cell type-specific chromosome organization in the β-globin locus

(2012) Ivan Junier et al.   NUCLEIC ACIDS RESEARCH

A Regulatory Archipelago Controls Hox Genes Transcription in Digits

(2011) Thomas Montavon et al.   CELL

The complex transcription regulatory landscape of our genome: control in three dimensions

(2011) Erik Splinter et al.   EMBO JOURNAL

Diverse gene reprogramming events occur in the same spatial clusters of distal regulatory elements

(2011) O. Hakim et al.   GENOME RESEARCH

TheDrosophilaFTZ-F1 Nuclear Receptor Mediates Juvenile Hormone Activation ofE75AGene Expression through an Intracellular Pathway

(2011) Edward B. Dubrovsky et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Enhancer function: new insights into the regulation of tissue-specific gene expression

(2011) Chin-Tong Ong et al.   NATURE REVIEWS GENETICS

Long-range chromatin interactions at the mouse Igf2/H19 locus reveal a novel paternally expressed long non-coding RNA

(2011) Franck Court et al.   NUCLEIC ACIDS RESEARCH

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

Multiple retinoic acid response elements cooperate to enhance the inducibility of CYP26A1 gene expression in liver

(2010) Yao Zhang et al.   GENE

Simple Combinations of Lineage-Determining Transcription Factors Prime cis-Regulatory Elements Required for Macrophage and B Cell Identities

(2010) Sven Heinz et al.   MOLECULAR CELL

Cell type specificity of chromatin organization mediated by CTCF and cohesin

(2010) Chunhui Hou et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genomic mapping of binding regions for the Ecdysone receptor protein complex

(2009) Z. Gauhar et al.   GENOME RESEARCH

Lactogenic Hormonal Induction of Long Distance Interactions between β-Casein Gene Regulatory Elements

(2009) Elena B. Kabotyanski et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Hormonal Regulation of the E75 Gene in Drosophila: Identifying Functional Regulatory Elements through Computational and Biological Analysis

(2009) Travis J. Bernardo et al.   JOURNAL OF MOLECULAR BIOLOGY

Long-Range Transcriptional Control of Progesterone Receptor Gene Expression

(2009) Jamie Bonéy-Montoya et al.   MOLECULAR ENDOCRINOLOGY

Unlocking the secrets of the genome

(2009) Susan E. Celniker et al.   NATURE

An oestrogen-receptor-α-bound human chromatin interactome

(2009) Melissa J. Fullwood et al.   NATURE

Rapid detection and curation of conserved DNA via enhanced-BLAT and EvoPrinterHD analysis

(2008) Amarendra S Yavatkar et al.   BMC GENOMICS

Thermodynamic Dissection of Progesterone Receptor Interactions at the Mouse Mammary Tumor Virus Promoter: Monomer Binding and Strong Cooperativity Dominate the Assembly Reaction

(2008) Keith D. Connaghan-Jones et al.   JOURNAL OF MOLECULAR BIOLOGY

Analyzing real-time PCR data by the comparative CT method

(2008) Thomas D Schmittgen et al.   Nature Protocols