Surprisingly extensive mixed phylogenetic and ecological signals among bacterial Operational Taxonomic Units

Lineage-dependent ecological coherence in bacteria

(2012) Alexander F. Koeppel et al.   FEMS MICROBIOLOGY ECOLOGY

Assessing and Improving Methods Used in Operational Taxonomic Unit-Based Approaches for 16S rRNA Gene Sequence Analysis

(2011) Patrick D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Fine-Scale Distribution Patterns of Synechococcus Ecological Diversity in Microbial Mats of Mushroom Spring, Yellowstone National Park

(2011) Eric D. Becraft et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

A large-scale benchmark study of existing algorithms for taxonomy-independent microbial community analysis

(2011) Y. Sun et al.   BRIEFINGS IN BIOINFORMATICS

Accounting for uncertainty in species delineation during the analysis of environmental DNA sequence data

(2011) Jeff R. Powell   Methods in Ecology and Evolution

Influence of Molecular Resolution on Sequence-Based Discovery of Ecological Diversity amongSynechococcusPopulations in an Alkaline Siliceous Hot Spring Microbial Mat

(2010) Melanie C. Melendrez et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Ecology of Speciation in the Genus Bacillus

(2010) N. Connor et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Evolutionary divergence and biogeography of sympatric niche-differentiated bacterial populations

(2010) Brian B Oakley et al.   ISME Journal

Bacterial diversity in the oral cavity of 10 healthy individuals

(2010) Elisabeth M Bik et al.   ISME Journal

Evolutionary criteria outperform operational approaches in producing ecologically relevant fungal species inventories

(2010) JEFF R. POWELL et al.   MOLECULAR ECOLOGY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Inferring evolutionarily significant units of bacterial diversity from broad environmental surveys of single-locus data

(2009) T. G. Barraclough et al.   Biology Letters

Spatial patterns of bacterial taxa in nature reflect ecological traits of deep branches of the 16S rRNA bacterial tree

(2009) Laurent Philippot et al.   ENVIRONMENTAL MICROBIOLOGY

On the origin of prokaryotic species

(2009) W. F. Doolittle et al.   GENOME RESEARCH

Microbial community profiling for human microbiome projects: Tools, techniques, and challenges

(2009) M. Hamady et al.   GENOME RESEARCH

A comprehensive survey of soil acidobacterial diversity using pyrosequencing and clone library analyses

(2009) Ryan T Jones et al.   ISME Journal

Universal species concept: pipe dream or a step toward unifying biology?

(2009) James T. Staley   JOURNAL OF INDUSTRIAL MICROBIOLOGY & BIOTECHNOLOGY

Deep phylogeny, ancestral groups and the four ages of life

(2009) T. Cavalier-Smith   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Highly specialized microbial diversity in hyper-arid polar desert

(2009) S. B. Pointing et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Topographical and Temporal Diversity of the Human Skin Microbiome

(2009) E. A. Grice et al.   SCIENCE

The Origins of Ecological Diversity in Prokaryotes

(2008) Frederick M. Cohan et al.   CURRENT BIOLOGY

Molecular analysis of bacterial community succession during prolonged compost curing

(2008) Michael Danon et al.   FEMS MICROBIOLOGY ECOLOGY

Distantly sampled soils carry few species in common

(2008) Roberta R Fulthorpe et al.   ISME Journal

jModelTest: Phylogenetic Model Averaging

(2008) D. Posada   MOLECULAR BIOLOGY AND EVOLUTION

The influence of sex, handedness, and washing on the diversity of hand surface bacteria

(2008) N. Fierer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Identifying the fundamental units of bacterial diversity: A paradigm shift to incorporate ecology into bacterial systematics

(2008) A. Koeppel et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Resource Partitioning and Sympatric Differentiation Among Closely Related Bacterioplankton

(2008) D. E. Hunt et al.   SCIENCE