Identification of the nature of reading frame transitions observed in prokaryotic genomes

Translational recoding in archaea

(2012) Beatrice Cobucci-Ponzano et al.   EXTREMOPHILES

Non-canonical translation in RNA viruses

(2012) A. E. Firth et al.   JOURNAL OF GENERAL VIROLOGY

Pseudogene Recoding Revealed from Proteomic Analysis of Salmonella Serovars

(2012) Ye Feng et al.   JOURNAL OF PROTEOME RESEARCH

GeneTack database: genes with frameshifts in prokaryotic genomes and eukaryotic mRNA sequences

(2012) Ivan Antonov et al.   NUCLEIC ACIDS RESEARCH

Efficient -2 frameshifting by mammalian ribosomes to synthesize an additional arterivirus protein

(2012) Y. Fang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Identification of A-to-I RNA editing: Dotting the i’s in the human transcriptome

(2011) A. Kiran et al.   BIOCHEMISTRY-MOSCOW

Regulation of gene expression by reiterative transcription

(2011) Charles L Turnbough   CURRENT OPINION IN MICROBIOLOGY

A Pilot Study of Bacterial Genes with Disrupted ORFs Reveals a Surprising Profusion of Protein Sequence Recoding Mediated by Ribosomal Frameshifting and Transcriptional Realignment

(2011) V. Sharma et al.   MOLECULAR BIOLOGY AND EVOLUTION

Cotranslational Control of DNA Transposition: A Window of Opportunity

(2011) Guy Duval-Valentin et al.   MOLECULAR CELL

Polyamine sensing by nascent ornithine decarboxylase antizyme stimulates decoding of its mRNA

(2011) Leo Kurian et al.   NATURE

Evolutionary pressures on simple sequence repeats in prokaryotic coding regions

(2011) Wei-Hsiang Lin et al.   NUCLEIC ACIDS RESEARCH

Functional Characterization and High-Throughput Proteomic Analysis of Interrupted Genes in the ArchaeonSulfolobus solfataricus

(2010) Beatrice Cobucci-Ponzano et al.   JOURNAL OF PROTEOME RESEARCH

Short spacing between the Shine-Dalgarno sequence and P codon destabilizes codon-anticodon pairing in the P site to promote +1 programmed frameshifting

(2010) Aishwarya Devaraj et al.   MOLECULAR MICROBIOLOGY

Elucidating the inosinome: global approaches to adenosine-to-inosine RNA editing

(2010) Bjorn-Erik Wulff et al.   NATURE REVIEWS GENETICS

The phasevarion: phase variation of type III DNA methyltransferases controls coordinated switching in multiple genes

(2010) Yogitha N. Srikhanta et al.   NATURE REVIEWS MICROBIOLOGY

Two groups of phenylalanine biosynthetic operon leader peptides genes: a high level of apparently incidental frameshifting in decoding Escherichia coli pheL

(2010) Olga L. Gurvich et al.   NUCLEIC ACIDS RESEARCH

The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored

(2010) D. Szklarczyk et al.   NUCLEIC ACIDS RESEARCH

The Extinction Dynamics of Bacterial Pseudogenes

(2010) Chih-Horng Kuo et al.   PLoS Genetics

GENETACK: FRAMESHIFT IDENTIFICATION IN PROTEIN-CODING SEQUENCES BY THE VITERBI ALGORITHM

(2010) IVAN ANTONOV et al.   Journal of Bioinformatics and Computational Biology

Assessing the genomic evidence for conserved transcribed pseudogenes under selection

(2009) Amit N Khachane et al.   BMC GENOMICS

A Gripping Tale of Ribosomal Frameshifting: Extragenic Suppressors of Frameshift Mutations Spotlight P-Site Realignment

(2009) J. F. Atkins et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Slip into Something More Functional: Selection Maintains Ancient Frameshifts in Homopolymeric Sequences

(2009) J. J. Wernegreen et al.   MOLECULAR BIOLOGY AND EVOLUTION

Recode-2: new design, new search tools, and many more genes

(2009) Michaël Bekaert et al.   NUCLEIC ACIDS RESEARCH

MEME SUITE: tools for motif discovery and searching

(2009) T. L. Bailey et al.   NUCLEIC ACIDS RESEARCH

RNA pseudoknots and the regulation of protein synthesis

(2008) Ian Brierley et al.   BIOCHEMICAL SOCIETY TRANSACTIONS

Ornithine decarboxylase antizyme finder (OAF): Fast and reliable detection of antizymes with frameshifts in mRNAs

(2008) Michael Bekaert et al.   BMC BIOINFORMATICS

Argyrophilic grain disease

(2008) I. Ferrer et al.   BRAIN

Apical Loop-Internal Loop RNA Pseudoknots

(2008) Marie-Hélène Mazauric et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Translational Coupling Controls Expression and Function of the DrrAB Drug Efflux Pump

(2008) Prajakta Pradhan et al.   JOURNAL OF MOLECULAR BIOLOGY

KnotInFrame: prediction of −1 ribosomal frameshift events

(2008) Corinna Theis et al.   NUCLEIC ACIDS RESEARCH

Frameshifting RNA pseudoknots: Structure and mechanism

(2008) David P. Giedroc et al.   VIRUS RESEARCH