Comprehensive analysis of DNA polymerase III α subunits and their homologs in bacterial genomes

Proofreading exonuclease on a tether: the complex between the E. coli DNA polymerase III subunits α, ε, θ and β reveals a highly flexible arrangement of the proofreading domain

(2013) Kiyoshi Ozawa et al.   NUCLEIC ACIDS RESEARCH

The Genome Sequences of Cellulomonas fimi and “Cellvibrio gilvus” Reveal the Cellulolytic Strategies of Two Facultative Anaerobes, Transfer of “Cellvibrio gilvus” to the Genus Cellulomonas, and Proposal of Cellulomonas gilvus sp. nov

(2013) Melissa R. Christopherson et al.   PLoS One

Structure of the PolIIIα-τc-DNA Complex Suggests an Atomic Model of the Replisome

(2013) Bin Liu et al.   STRUCTURE

A structural role for the PHP domain in E. coli DNA polymerase III

(2013) Tiago Barros et al.   BMC STRUCTURAL BIOLOGY

Mechanism for priming DNA synthesis by yeast DNA Polymerase α

(2013) Rajika L Perera et al.   eLife

On the molecular mechanism of GC content variation among eubacterial genomes

(2012) Hao Wu et al.   Biology Direct

Distinct co-evolution patterns of genes associated to DNA polymerase III DnaE and PolC

(2012) Stefan Engelen et al.   BMC GENOMICS

Architecture and Conservation of the Bacterial DNA Replication Machinery, an Underexploited Drug Target

(2012) Andrew Robinson et al.   CURRENT DRUG TARGETS

Chromosomal Replication Initiation Machinery of Low-G+C-Content Firmicutes

(2012) G. S. Briggs et al.   JOURNAL OF BACTERIOLOGY

New insights into replisome fluidity during chromosome replication

(2012) Isabel Kurth et al.   TRENDS IN BIOCHEMICAL SCIENCES

DNA Replicases from a Bacterial Perspective

(2011) Charles S. McHenry   Annual Review of Biochemistry

ProtTest 3: fast selection of best-fit models of protein evolution

(2011) Diego Darriba et al.   BIOINFORMATICS

Bacterial replicases and related polymerases

(2011) Charles S McHenry   CURRENT OPINION IN CHEMICAL BIOLOGY

The N-terminal region of the bacterial DNA polymerase PolC features a pair of domains, both distantly related to domain V of the DNA polymerase III τ subunit

(2011) Kęstutis Timinskas et al.   FEBS Journal

The flexibility of UV-inducible mutation in Deinococcus ficus as evidenced by the existence of the imuB–dnaE2 gene cassette and generation of superior feather degrading bacteria

(2011) You-Hong Zeng et al.   MICROBIOLOGICAL RESEARCH

HHblits: lightning-fast iterative protein sequence searching by HMM-HMM alignment

(2011) Michael Remmert et al.   NATURE METHODS

Single-molecule studies reveal the function of a third polymerase in the replisome

(2011) Roxana E Georgescu et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Translesion-synthesis DNA polymerases participate in replication of the telomeres in Streptomyces

(2011) Hsiu-Hui Tsai et al.   NUCLEIC ACIDS RESEARCH

Computational analysis of DNA replicases in double-stranded DNA viruses: relationship with the genome size

(2011) Darius Kazlauskas et al.   NUCLEIC ACIDS RESEARCH

Interactive Tree Of Life v2: online annotation and display of phylogenetic trees made easy

(2011) I. Letunic et al.   NUCLEIC ACIDS RESEARCH

The Pfam protein families database

(2011) M. Punta et al.   NUCLEIC ACIDS RESEARCH

Accelerated Profile HMM Searches

(2011) Sean R. Eddy   PLoS Computational Biology

Reconstitution of the B. subtilis Replisome with 13 Proteins Including Two Distinct Replicases

(2010) Glenn M. Sanders et al.   MOLECULAR CELL

Homologous over-extension: a challenge for iterative similarity searches

(2010) Mileidy W. Gonzalez et al.   NUCLEIC ACIDS RESEARCH

ConSurf 2010: calculating evolutionary conservation in sequence and structure of proteins and nucleic acids

(2010) H. Ashkenazy et al.   NUCLEIC ACIDS RESEARCH

Essential roles for imuA'- and imuB-encoded accessory factors in DnaE2-dependent mutagenesis in Mycobacterium tuberculosis

(2010) D. F. Warner et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Stoichiometry and Architecture of Active DNA Replication Machinery in Escherichia coli

(2010) R. Reyes-Lamothe et al.   SCIENCE

The C-Terminal Domain of the Bacterial SSB Protein Acts as a DNA Maintenance Hub at Active Chromosome Replication Forks

(2010) Audrey Costes et al.   PLoS Genetics

Evidence of Selection upon Genomic GC-Content in Bacteria

(2010) Falk Hildebrand et al.   PLoS Genetics

Evidence That Mutation Is Universally Biased towards AT in Bacteria

(2010) Ruth Hershberg et al.   PLoS Genetics

A plot of G + C content against sequence length of 640 bacterial chromosomes shows the points are widely scattered in the upper triangular area

(2009) Feng-Biao Guo et al.   CHROMOSOME RESEARCH

Mutagenic lesion bypass and two functionally different RecA proteins inDeinococcus deserti

(2009) Rémi Dulermo et al.   MOLECULAR MICROBIOLOGY

The use of automatic tools and human expertise in template-based modeling of CASP8 target proteins

(2009) Česlovas Venclovas et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Insights into the Replisome from the Structure of a Ternary Complex of the DNA Polymerase III α-Subunit

(2008) Richard A. Wing et al.   JOURNAL OF MOLECULAR BIOLOGY

An Improved General Amino Acid Replacement Matrix

(2008) S. Q. Le et al.   MOLECULAR BIOLOGY AND EVOLUTION

Structure of PolC reveals unique DNA binding and fidelity determinants

(2008) R. J. Evans et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Whole-genome mutational biases in bacteria

(2008) P. A. Lind et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA