标题
PiDNA: predicting protein–DNA interactions with structural models
作者
关键词
-
出版物
NUCLEIC ACIDS RESEARCH
Volume 41, Issue W1, Pages W523-W530
出版商
Oxford University Press (OUP)
发表日期
2013-05-24
DOI
10.1093/nar/gkt388
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- PreDNA: accurate prediction of DNA-binding sites in proteins by integrating sequence and geometric structure information
- (2013) Tao Li et al. BIOINFORMATICS
- A Structural-Based Strategy for Recognition of Transcription Factor Binding Sites
- (2013) Beisi Xu et al. PLoS One
- A knowledge-based orientation potential for transcription factor-DNA docking
- (2012) Takako Takeda et al. BIOINFORMATICS
- 3DTF: a web server for predicting transcription factor PWMs using 3D structure-based energy calculations
- (2012) R. Gabdoulline et al. NUCLEIC ACIDS RESEARCH
- DBD2BS: connecting a DNA-binding protein with its binding sites
- (2012) T.-Y. Chien et al. NUCLEIC ACIDS RESEARCH
- Characterization and prediction of the binding site in DNA-binding proteins: improvement of accuracy by combining residue composition, evolutionary conservation and structural parameters
- (2012) Sucharita Dey et al. NUCLEIC ACIDS RESEARCH
- The RCSB Protein Data Bank: new resources for research and education
- (2012) Peter W. Rose et al. NUCLEIC ACIDS RESEARCH
- Predicting Target DNA Sequences of DNA-Binding Proteins Based on Unbound Structures
- (2012) Chien-Yu Chen et al. PLoS One
- A discriminatory function for prediction of protein-DNA interactions based on alpha shape modeling
- (2010) W. Zhou et al. BIOINFORMATICS
- iDBPs: a web server for the identification of DNA binding proteins
- (2010) Guy Nimrod et al. BIOINFORMATICS
- Structure-based prediction of DNA-binding proteins by structural alignment and a volume-fraction corrected DFIRE-based energy function
- (2010) H. Zhao et al. BIOINFORMATICS
- Creating PWMs of transcription factors using 3D structure-based computation of protein-DNA free binding energies
- (2010) Denitsa Alamanova et al. BMC BIOINFORMATICS
- DNABINDPROT: fluctuation-based predictor of DNA-binding residues within a network of interacting residues
- (2010) Pemra Ozbek et al. NUCLEIC ACIDS RESEARCH
- Assessment of the optimization of affinity and specificity at protein–DNA interfaces
- (2009) Justin Ashworth et al. NUCLEIC ACIDS RESEARCH
- 3D-footprint: a database for the structural analysis of protein–DNA complexes
- (2009) Bruno Contreras-Moreira NUCLEIC ACIDS RESEARCH
- From Nonspecific DNA–Protein Encounter Complexes to the Prediction of DNA–Protein Interactions
- (2009) Mu Gao et al. PLoS Computational Biology
- Prediction of TF target sites based on atomistic models of protein-DNA complexes
- (2008) Vladimir Angarica et al. BMC BIOINFORMATICS
- DBD-Hunter: a knowledge-based method for the prediction of DNA–protein interactions
- (2008) Mu Gao et al. NUCLEIC ACIDS RESEARCH
- UniPROBE: an online database of protein binding microarray data on protein-DNA interactions
- (2008) D. E. Newburger et al. NUCLEIC ACIDS RESEARCH
- Structure-based prediction of transcription factor binding sites using a protein-DNA docking approach
- (2008) Zhijie Liu et al. PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
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