RNAiFold: a web server for RNA inverse folding and molecular design

Frnakenstein: multiple target inverse RNA folding

(2012) Rune B Lyngsø et al.   BMC BIOINFORMATICS

RNAiFOLD: A CONSTRAINT PROGRAMMING ALGORITHM FOR RNA INVERSE FOLDING AND MOLECULAR DESIGN

(2012) JUAN ANTONIO GARCIA-MARTIN et al.   Journal of Bioinformatics and Computational Biology

Inverse folding of RNA pseudoknot structures

(2010) James ZM Gao et al.   Algorithms for Molecular Biology

Nucleic acid sequence design via efficient ensemble defect optimization

(2010) Joseph N. Zadeh et al.   JOURNAL OF COMPUTATIONAL CHEMISTRY

NUPACK: Analysis and design of nucleic acid systems

(2010) Joseph N. Zadeh et al.   JOURNAL OF COMPUTATIONAL CHEMISTRY

The Vienna RNA Websuite

(2008) A. R. Gruber et al.   NUCLEIC ACIDS RESEARCH