User-friendly solutions for microarray quality control and pre-processing on ArrayAnalysis.org

Reuse of public genome-wide gene expression data

(2012) Johan Rung et al.   NATURE REVIEWS GENETICS

ArrayExpress update—trends in database growth and links to data analysis tools

(2012) Gabriella Rustici et al.   NUCLEIC ACIDS RESEARCH

NCBI GEO: archive for functional genomics data sets—update

(2012) Tanya Barrett et al.   NUCLEIC ACIDS RESEARCH

Exploring pathway interactions in insulin resistant mouse liver

(2011) Thomas Kelder et al.   BMC Systems Biology

FOXO3 programs tumor-associated DCs to become tolerogenic in human and murine prostate cancer

(2011) Stephanie K. Watkins et al.   JOURNAL OF CLINICAL INVESTIGATION

Challenges of molecular nutrition research 6: the nutritional phenotype database to store, share and evaluate nutritional systems biology studies

(2010) Ben van Ommen et al.   Genes and Nutrition

Microarray data quality control improves the detection of differentially expressed genes

(2010) Audrey Kauffmann et al.   GENOMICS

BioMart Central Portal—unified access to biological data

(2009) Syed Haider et al.   NUCLEIC ACIDS RESEARCH

arrayQualityMetrics—a bioconductor package for quality assessment of microarray data

(2008) Audrey Kauffmann et al.   BIOINFORMATICS

The NuGO proof of principle study package: a collaborative research effort of the European Nutrigenomics Organisation

(2008) Michela Baccini et al.   Genes and Nutrition

AFFYGCQC: A WEB-BASED INTERFACE TO DETECT OUTLYING GENECHIPS WITH EXTREME STUDENTIZED DEVIATE TESTS

(2008) JOSÉ OSORIO Y FORTÉA et al.   Journal of Bioinformatics and Computational Biology