T-REX: a web server for inferring, validating and visualizing phylogenetic trees and networks

Towards an accurate identification of mosaic genes and partial horizontal gene transfers

(2011) Alix Boc et al.   NUCLEIC ACIDS RESEARCH

Phylemon 2.0: a suite of web-tools for molecular evolution, phylogenetics, phylogenomics and hypotheses testing

(2011) R. Sanchez et al.   NUCLEIC ACIDS RESEARCH

Inferring and Validating Horizontal Gene Transfer Events Using Bipartition Dissimilarity

(2010) Alix Boc et al.   SYSTEMATIC BIOLOGY

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

(2010) Stéphane Guindon et al.   SYSTEMATIC BIOLOGY

PhyloNet: a software package for analyzing and reconstructing reticulate evolutionary relationships

(2008) Cuong Than et al.   BMC BIOINFORMATICS

An Improved General Amino Acid Replacement Matrix

(2008) S. Q. Le et al.   MOLECULAR BIOLOGY AND EVOLUTION

Phylogeny.fr: robust phylogenetic analysis for the non-specialist

(2008) A. Dereeper et al.   NUCLEIC ACIDS RESEARCH