BioShell Threader: protein homology detection based on sequence profiles and secondary structure profiles

HMMER web server: interactive sequence similarity searching

(2011) R. D. Finn et al.   NUCLEIC ACIDS RESEARCH

Generalized Fragment Picking in Rosetta: Design, Protocols and Applications

(2011) Dominik Gront et al.   PLoS One

Assessment of template based protein structure predictions in CASP9

(2011) Valerio Mariani et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

SAM-T08, HMM-based protein structure prediction

(2009) K. Karplus   NUCLEIC ACIDS RESEARCH

Utility library for structural bioinformatics

(2008) D. Gront et al.   BIOINFORMATICS

Predict-2nd: a tool for generalized protein local structure prediction

(2008) Sol Katzman et al.   BIOINFORMATICS

MUSTER: Improving protein sequence profile-profile alignments by using multiple sources of structure information

(2008) Sitao Wu et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

LiveBench-8: The large-scale, continuous assessment of automated protein structure prediction

(2004) Leszek Rychlewski et al.   PROTEIN SCIENCE