New insights into the fundamental role of topological constraints as a determinant of two-way junction conformation

Topological constraints: using RNA secondary structure to model 3D conformation, folding pathways, and dynamic adaptation

(2011) Maximillian H Bailor et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

3D maps of RNA interhelical junctions

(2011) Maximillian H Bailor et al.   Nature Protocols

Compact Intermediates in RNA Folding

(2010) Sarah A. Woodson   Annual Review of Biophysics

Major groove width variations in RNA structures determined by NMR and impact of 13C residual chemical shift anisotropy and 1H–13C residual dipolar coupling on refinement

(2010) Blanton S. Tolbert et al.   JOURNAL OF BIOMOLECULAR NMR

An RNA Molecular Switch: Intrinsic Flexibility of 23S rRNA Helices 40 and 68 5′-UAA/5′-GAN Internal Loops Studied by Molecular Dynamics Methods

(2010) Kamila Réblová et al.   Journal of Chemical Theory and Computation

Computational approaches to 3D modeling of RNA

(2010) Christian Laing et al.   JOURNAL OF PHYSICS-CONDENSED MATTER

Multiple native states reveal persistent ruggedness of an RNA folding landscape

(2010) Sergey V. Solomatin et al.   NATURE

Atomic accuracy in predicting and designing noncanonical RNA structure

(2010) Rhiju Das et al.   NATURE METHODS

Promoting RNA helical stacking via A-minor junctions

(2010) Cody Geary et al.   NUCLEIC ACIDS RESEARCH

Topology Links RNA Secondary Structure with Global Conformation, Dynamics, and Adaptation

(2010) M. H. Bailor et al.   SCIENCE

Folding and Finding RNA Secondary Structure

(2010) D. H. Mathews et al.   Cold Spring Harbor Perspectives in Biology

The Dynamic Landscapes of RNA Architecture

(2009) José Almeida Cruz et al.   CELL

Analysis of Four-Way Junctions in RNA Structures

(2009) Christian Laing et al.   JOURNAL OF MOLECULAR BIOLOGY

Tertiary Motifs Revealed in Analyses of Higher-Order RNA Junctions

(2009) Christian Laing et al.   JOURNAL OF MOLECULAR BIOLOGY

Intermediate Rate Atomic Trajectories of RNA by Solid-State NMR Spectroscopy

(2009) Greg L. Olsen et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Constructing RNA dynamical ensembles by combining MD and motionally decoupled NMR RDCs: new insights into RNA dynamics and adaptive ligand recognition

(2009) Aaron T. Frank et al.   NUCLEIC ACIDS RESEARCH

Do conformational biases of simple helical junctions influence RNA folding stability and specificity?

(2009) V. B. Chu et al.   RNA

Riboswitches: Emerging Themes in RNA Structure and Function

(2008) Rebecca K. Montange et al.   Annual Review of Biophysics

RNA dynamics: it is about time

(2008) Hashim M Al-Hashimi et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Unwinding RNA's secrets: advances in the biology, physics, and modeling of complex RNAs

(2008) Vincent B Chu et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Hinge Stiffness Is a Barrier to RNA Folding

(2008) Jörg C. Schlatterer et al.   JOURNAL OF MOLECULAR BIOLOGY

Critical Assessment of Nucleic Acid Electrostatics via Experimental and Computational Investigation of an Unfolded State Ensemble

(2008) Yu Bai et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

The MC-Fold and MC-Sym pipeline infers RNA structure from sequence data

(2008) Marc Parisien et al.   NATURE

Single-molecule FRET measures bends and kinks in DNA

(2008) A. K. Wozniak et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA