GeneSigDB: a manually curated database and resource for analysis of gene expression signatures

Molecular signatures database (MSigDB) 3.0

(2011) A. Liberzon et al.   BIOINFORMATICS

Building prognostic models for breast cancer patients using clinical variables and hundreds of gene expression signatures

(2011) Cheng Fan et al.   BMC Medical Genomics

Combining Gene Signatures Improves Prediction of Breast Cancer Survival

(2011) Xi Zhao et al.   PLoS One

Multi-way set enumeration in weight tensors

(2010) Elisabeth Georgii et al.   MACHINE LEARNING

CCancer: a bird's eye view on gene lists reported in cancer-related studies

(2010) S. Dietmann et al.   NUCLEIC ACIDS RESEARCH

NCBI GEO: archive for functional genomics data sets--10 years on

(2010) T. Barrett et al.   NUCLEIC ACIDS RESEARCH

Reactome: a database of reactions, pathways and biological processes

(2010) D. Croft et al.   NUCLEIC ACIDS RESEARCH

Web-based interrogation of gene expression signatures using EXALT

(2009) Jun Wu et al.   BMC BIOINFORMATICS

GeneSigDB—a curated database of gene expression signatures

(2009) Aedín C. Culhane et al.   NUCLEIC ACIDS RESEARCH

BioMart Central Portal—unified access to biological data

(2009) Syed Haider et al.   NUCLEIC ACIDS RESEARCH

Gene Expression Atlas at the European Bioinformatics Institute

(2009) Misha Kapushesky et al.   NUCLEIC ACIDS RESEARCH

The Gene Ontology's Reference Genome Project: A Unified Framework for Functional Annotation across Species

(2009)   PLoS Computational Biology

Identifying Relationships among Genomic Disease Regions: Predicting Genes at Pathogenic SNP Associations and Rare Deletions

(2009) Soumya Raychaudhuri et al.   PLoS Genetics

ArrayExpress update--from an archive of functional genomics experiments to the atlas of gene expression

(2008) H. Parkinson et al.   NUCLEIC ACIDS RESEARCH

Gene Set Enrichment in eQTL Data Identifies Novel Annotations and Pathway Regulators

(2008) Chunlei Wu et al.   PLoS Genetics