ConTra v2: a tool to identify transcription factor binding sites across species, update 2011

Combinatorial regulation of transcription factors and microRNAs

(2010) Naifang Su et al.   BMC Systems Biology

The TEA Transcription Factor Tec1 Confers Promoter-Specific Gene Regulation by Ste12-Dependent and -Independent Mechanisms

(2010) Barbara Heise et al.   EUKARYOTIC CELL

Efficient Double Fragmentation ChIP-seq Provides Nucleotide Resolution Protein-DNA Binding Profiles

(2010) Michal Mokry et al.   PLoS One

Promoter and intron 1 polymorphisms of COL1A1 interact to regulate transcription and susceptibility to osteoporosis

(2009) H. Jin et al.   HUMAN MOLECULAR GENETICS

Genomic Targets of the KRAB and SCAN Domain-containing Zinc Finger Protein 263

(2009) Seth Frietze et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Insights from genomic profiling of transcription factors

(2009) Peggy J. Farnham   NATURE REVIEWS GENETICS

JASPAR 2010: the greatly expanded open-access database of transcription factor binding profiles

(2009) Elodie Portales-Casamar et al.   NUCLEIC ACIDS RESEARCH

Variation in Homeodomain DNA Binding Revealed by High-Resolution Analysis of Sequence Preferences

(2008) Michael F. Berger et al.   CELL

Most mammalian mRNAs are conserved targets of microRNAs

(2008) R. C. Friedman et al.   GENOME RESEARCH

A Composite Intronic Element Directs Dynamic Binding of the Progesterone Receptor and GATA-2

(2008) Angeliki Magklara et al.   MOLECULAR ENDOCRINOLOGY

ConTra: a promoter alignment analysis tool for identification of transcription factor binding sites across species

(2008) Bart Hooghe et al.   NUCLEIC ACIDS RESEARCH

Genome-wide identification of in vivo protein-DNA binding sites from ChIP-Seq data

(2008) R. Jothi et al.   NUCLEIC ACIDS RESEARCH

Gene Regulation by Transcription Factors and MicroRNAs

(2008) O. Hobert   SCIENCE